LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g02715	ATGAGTTCCGGTGAGTTGGGTTGCATCTACGCCACCTTGATTCTCCACGACGATGGAATCCCAATCACCGCGGAGAAGATCAGCACAATCTTGAAGGCTGCCGATGTCACCGTCGAATCCTACTGGCCAAGCCTATTCGCCAAGCTTGCTCAGAGCAAGAACGTTGACGATCTTGTTTTGAACGCTGGCGCAGCCGGAGGAGCCGCCGTTGTTTCAGCCGGAGGAGCCGCACCCGCCGCTGGTGGAGCTGCAGCAGCAGAGGCACCTGTCGAGGCAAAGAAGGAAGAAGCCAAGGAAGAAAGTGATGATGACATGGGCTTTAGTTTGTTTGATTAG	336	0.5476	MSSGELGCIYATLILHDDGIPITAEKISTILKAADVTVESYWPSLFAKLAQSKNVDDLVLNAGAAGGAAVVSAGGAAPAAGGAAAAEAPVEAKKEEAKEESDDDMGFSLFD	111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g02715	111	MobiDBLite	consensus disorder prediction	89	105	-	-
	Vivi3g02715	111	FunFam	60S acidic ribosomal protein P1	1	63	-	-
	Vivi3g02715	111	Hamap	50S ribosomal protein L12 [rpl12].	6	111	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Vivi3g02715	111	CDD	Ribosomal_P1	5	61	-	-
	Vivi3g02715	111	Pfam	60s Acidic ribosomal protein	22	110	-	-
	Vivi3g02715	111	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	1	111	-	-
	Vivi3g02715	111	PRINTS	Ribosomal protein P2 signature	25	36	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Vivi3g02715	111	PRINTS	Ribosomal protein P2 signature	83	97	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Vivi3g02715	111	PRINTS	Ribosomal protein P2 signature	98	109	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Vivi3g02715	111	MobiDBLite	consensus disorder prediction	83	111	-	-
	Vivi3g02715	111	Gene3D	-	1	63	IPR038716	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g02715	Vivi-Chr3	45411520	45412605	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g02715	1	111	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	54.054	2.32e-38	123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g02715	K02942		-	egr:104437298	124.02