Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02692 ATGGGTGAAATTGTGACTAGTGGTGAGAGATTGGTGAGAGTTGAAGAAGAGGAAGAGAGTGGTGAGAGTAGAAGAGGTGGTGAAATGAAAGGGCTTTTGAGATGGGAGAGGTTTTTGCCGAAGATGGTTTTGAGAGTGCTTTTGGTTGAAGCTGATGATTGTACTAGGCAGATTATAACAGCGCTTCTTAGGAAATGCAATTATAAAGTTGCTGCTGTTGCTGATGGATTGAAGGCGTGGGAGATACTTAAGGGAAGACCGCACAATTTCGATCTTATACTTACAGAAGTCGATTTGCCGTCTGTATCTGGCTATGCGCTTCTCTCGTTAATTATGGAGCATGATTCTTGCAAAAGCATCCCTGTTATAATGATGTCGTCGCAAGATTCAGTTAGTACAGTATACAAATGCATGTGTAGAGGTGCAGCTGATTATCTTGTTAAGCCGATTCGGATAAATGAATTAAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCGTCTACCGCAACCGCTGGCATAAATGGTCCCCAAGATGAAAGTGATGCACAGCAGAAGGTTGAAGCGACTGCTGAAAACAACGCTGCTAGTAATCGTTCTAGTGGCGACGCTGCTTGCATTCAAAGAAATAAGGACTTGATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAACTGAGAGTGGCTTGGTTGATAACATGCAAGAATTTACTCAGCAGAAATGTGCTGAAGCACGTCCAAGTGAAAAAAAGACACAAGAATTTGACATTCGTTTAGGCCAGACATTGATTACGCAGGACAGTCACGTTGGAGGATTAAGCGTGGCTAACTGCAAAAATGGAGAGACAAGCACAAATAATGGCAAGGACGTTGATGATCAAGAGCATTTTAGGATTGCTAGCACCAGTGGTGAGGTTCATGACAATCACTATGTTCAAATTAACTCTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACGCATCCGAATTGCAGTCTCGAAAATTCATCAATTGATTGGACAAACAAGCTTGACAATTCTCCACAATTGGATCTTTCTCTTAGAAGCTCTCATCCAAGTAACATTGAGAAGGAACTTACTGAAGAAAGGAACACCCTTATGCATTCTAATGCTTCCGCTTTCAAACGGTATACTAACAGACAATTGCAAGCGTCACCGGCAGTAGTAGTTAACTTCTCTGATCAACAAAGAGAACAAAAAACAAATAATGATAACCATAACTCAGATAGTTCAGTACCAAGTATGAAAAAATGTAATATATCTCCGGCTACAGCCCAATCAAAAGAATCGGAACTCGCAACCTCACATTCCCAGCAAGGGCATTCTCTCCCAATTCCCGTAAAAAGCGTAAGGTTCAATGATCTTTGTATGGCCTATGGCTCAACACTCCCACAAGGGTTTTGTACACAATCAGGTCCACCATCAATGCCAGGTTCAGTTGTGTTTCTCGAACAGAATTTTCAAGCAGATGCGTTTTATCAGCCAAATAAAGAAAATAATTCAGAACAAGTTTACGAACCCCGTTGTCCGAATGGAAATAGCACCCAAAACCAAATTGTGCACACACAGGAACACAGGTCAGAACACGCAGAGGATCAAAGACTAATCTCCCCAACAACTGATCAAAGTGTATCCAGTAGTTTATGTAATAATGGAAATGCAAGCCATCTTAACAGTATTGGTTATGGAAGTAATTGTGGAAGTAGCAGCAATATTGAAAATGTCGCCGCTTTCAGGACATCAGCAGTTTCCGATGGTAAGAATGAAGACCTCACAAACGGTGGATACTCACTTTCACATCGATCTATGCTAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGAAAAGAGAGATGTTATGAAAAGAAGGTTCGATATGAGAGCAGGAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTCGTTCGCCAAGTGAATCCTGATTCTCTTTCTGGAGATAAAGATTGCTGA 2022 0.4149 MGEIVTSGERLVRVEEEEESGESRRGGEMKGLLRWERFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEILKGRPHNFDLILTEVDLPSVSGYALLSLIMEHDSCKSIPVIMMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSSTATAGINGPQDESDAQQKVEATAENNAASNRSSGDAACIQRNKDLIEKGSDAQSSCTKPNMETESGLVDNMQEFTQQKCAEARPSEKKTQEFDIRLGQTLITQDSHVGGLSVANCKNGETSTNNGKDVDDQEHFRIASTSGEVHDNHYVQINSTKEAIDLIGAFRTHPNCSLENSSIDWTNKLDNSPQLDLSLRSSHPSNIEKELTEERNTLMHSNASAFKRYTNRQLQASPAVVVNFSDQQREQKTNNDNHNSDSSVPSMKKCNISPATAQSKESELATSHSQQGHSLPIPVKSVRFNDLCMAYGSTLPQGFCTQSGPPSMPGSVVFLEQNFQADAFYQPNKENNSEQVYEPRCPNGNSTQNQIVHTQEHRSEHAEDQRLISPTTDQSVSSSLCNNGNASHLNSIGYGSNCGSSSNIENVAAFRTSAVSDGKNEDLTNGGYSLSHRSMLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVNPDSLSGDKDC 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02692 673 ProSiteProfiles Response regulatory domain profile. 45 163 IPR001789 GO:0000160
Vivi3g02692 673 Gene3D - 42 265 - -
Vivi3g02692 673 ProSiteProfiles CCT domain profile. 619 661 IPR010402 GO:0005515
Vivi3g02692 673 Pfam CCT motif 619 661 IPR010402 GO:0005515
Vivi3g02692 673 CDD psREC_PRR 46 149 - -
Vivi3g02692 673 SMART REC_2 44 159 IPR001789 GO:0000160
Vivi3g02692 673 MobiDBLite consensus disorder prediction 170 204 - -
Vivi3g02692 673 SUPERFAMILY CheY-like 41 168 IPR011006 -
Vivi3g02692 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 44 378 IPR045279 GO:0009736
Vivi3g02692 673 MobiDBLite consensus disorder prediction 645 673 - -
Vivi3g02692 673 Pfam Response regulator receiver domain 46 157 IPR001789 GO:0000160
Vivi3g02692 673 MobiDBLite consensus disorder prediction 407 459 - -
Vivi3g02692 673 MobiDBLite consensus disorder prediction 524 561 - -
Vivi3g02692 673 MobiDBLite consensus disorder prediction 419 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02692 Vivi-Chr3 45052107 45055645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02692 324 662 Response Regulator Gene Family AT5G24470 33.051 9.31e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi3g02692 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02692 K12130 - gmx:100777119 922.154