Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02681 ATGGCTCCAGGTCCAGTTATTGACGCAGTCACCGAACCCGAGCTCGACCAGCAACTTCCCTCTGTTGACGAAACTACCCTCAAGAAGAAACCCCAACCCGAGGAGGATGATGCTCCAATTATTGAGGACGTGAAGGAGGATGACAAAGATGAAGATGACGATGATGAGGACGATGATGACGAGGATGATGATGACAAGGAAGATGGCGCTCTAGGTGGTGCTGATGGTTCAAAACAAAGCAGAAGCGAGAAGAAGAGTCGAAAAGCAATGCTGAAACTCGGACTGAAACCTGTTACCGGCGTTAGTCGGGTCACAATCAAGAGAACCAAAAATATTCATTTTTTCATCTCAAAACCCGATGTATTCAAGAGTCCAAATTCTGAGACCTACATTATATTTGGGGAAGCAAAAATAGAAGACTTGAGCTCTCAGTTGCAGTCGCAAGCTGCTCAGCAGTTTAGGATGCCAGATATGGGATCTGTAATGGCAAAACAAGAACAAGGTGCAATAGCTGGTGCACAGCCTGAGGAGGAAGAGGAGGTTGATGATACTGGTGTGGAGCCCCATGACATTGATTTGGTCATGACACAAGCAGGAGTTTCCCGGACCAAGGCCGTCAAGGCTCTCAAGACTCACAATGGAGACATTGTTGGTGCCATTATGGAGCTCACTACTTAA 678 0.469 MAPGPVIDAVTEPELDQQLPSVDETTLKKKPQPEEDDAPIIEDVKEDDKDEDDDDEDDDDEDDDDKEDGALGGADGSKQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNIHFFISKPDVFKSPNSETYIIFGEAKIEDLSSQLQSQAAQQFRMPDMGSVMAKQEQGAIAGAQPEEEEEVDDTGVEPHDIDLVMTQAGVSRTKAVKALKTHNGDIVGAIMELTT 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02681 225 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 24 224 IPR016641 GO:0005854
Vivi3g02681 225 MobiDBLite consensus disorder prediction 39 69 - -
Vivi3g02681 225 Gene3D - 89 142 IPR038187 -
Vivi3g02681 225 Pfam HYPK UBA domain 185 224 IPR044034 -
Vivi3g02681 225 CDD UBA_NACA_NACP1 179 224 - -
Vivi3g02681 225 CDD NAC_NACA 94 140 - -
Vivi3g02681 225 FunFam Putative nascent polypeptide-associated complex subunit alpha 186 223 - -
Vivi3g02681 225 Gene3D - 186 223 - -
Vivi3g02681 225 Pfam NAC domain 83 138 IPR002715 -
Vivi3g02681 225 SMART NAC_2 83 139 IPR002715 -
Vivi3g02681 225 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 90 142 - -
Vivi3g02681 225 MobiDBLite consensus disorder prediction 1 89 - -
Vivi3g02681 225 ProSiteProfiles NAC A/B domain profile. 80 145 IPR002715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02681 Vivi-Chr3 44788312 44791155 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02681 K03626 - gmx:100807402 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02681 3 44788312 44791155 Vivi3g02681 3 44788312 44791155 ECH
Vivi7g01227 7 63242184 63243999 Vivi3g02681 3 44788312 44791155 PCT