Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02672 ATGGGTTCTCTGGCCTGTTGTCCGTCGCTCGATGATGGTACGGCGGTGTTATCGCTGAATTCCTTACCGTTAGGGTTCCGATTCAGACCTACTGATGAGGAGCTTATCGATTACTATCTACGTTCGAAGATCAACGGAAATGGTGATGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAACCCTGGGATATGCCTGATTTGTCAGTGATACGAAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGATCGAAAGTATCCTAATGGACATAGATTGAACAGAGCAACAACTCATGGATATTGGAAGGCAACCGGCAAGGATCGGAGAATCAAGTCTGGAACCCTCTTGATTGGAATGAAGAAGACTTTAGTTTTCTATAGCGGCCGTGCACCTAAAGGAAAGAGGACTAATTGGGTTATGCATGAGTATCGTCCCACCTTGCAGGAGCTTGATGGTACCAACCCAGGGCAGAGTCCATATGTTCTCTGTCGATTGTTTAAGAAAAACGATGAGAGCATTGAAGTATCGAACTGTGGTGAAGTGGAGCAGACTAATTCAGCTCCTATTGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATCCAGCTCCTATTACGGCATCCACATCACTGATCACAGAGGACGATATGCAGCTGGCTGTTATCCCCGATATCTCTGGTGAAACAGTATCCAAGGCTAAAACCTCAGTTGATTGCTATAGTGATGGATATGTCCAAAATCAGTTTGAAAAACTAGCTGCAGAGGAAGATCATGCGTTGAACTTTGACATATATTATAACCCGAAAGATGGTCTATTATTAGATGACAGGTTATTCTCCCCAGTTTTGGCACACATGCCACCTGAATTTGATTATCAAGCCAACAGTGAATCAGACGGTCAATGTGGGTTTCAATACGGTACCAATGAATTAAATATTTCAGACTTTTTAGATTCAAATCTTAATTGGGATCAAGTTCCATGTGAGGAGTCTAGTAGTTACCCGCAGAATTTCCCCCCCTTGTTAAATGTTAAGGACAATGGTTCAGGAAGTGACTCAGACGCAGAAGTTGCCAATATGATAACTTGTACGCAAGCTGCTTATCCTCACGAGGTAATAGACAGAAGGATTCCTTTTGCGACAACACCATCGTTTTGCCGCACCTTTGACTATAATGGTGATGATCAGAAGAGCAATGTTGTATTATTACAAAACAATTTCCAGACAAGTTTTCCATCCGATGTTAATTCTGGTGAAGTGTACAACATCAATGCTTATGATCAACCAAGAAACTATAATAATACATTTATAAGTGGTGAAAGTGGAATCATCATAAGGGCCCGACCAGCACGAGAGGAACAATTTAAGCCAAATTTGGATCAAGGTAATGCTGAAAGGAGAATTCGTTTGGCAAATGCGGGACGTGGCTCAAGCAGGAGTAGTACACAAGAGAAGCGTAGTTCAAAACCAATCATTGCAGTGGAGAAGAAAGCTGCAGAAAATCATGCTGCTGATGATGAAAGTTCTACGGGAACTAATCACACGTATAAAAAGAGGAAGGCATCCAAGTCAGTTATCACTAGAAAGATTTCTTTATTGCTAGGAAGGGCGCCTGTCAGATTGAAGACTTCCTCCAACTGCGCCTTGTGGTCTTCCGTTTTTGTAGTTTCTGTGTCTGTACTGGTTTCGTTAGTTGCTTTTACTAACATATGGGGATGTATTAAATTTTAG 1743 0.4211 MGSLACCPSLDDGTAVLSLNSLPLGFRFRPTDEELIDYYLRSKINGNGDEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGTLLIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLQELDGTNPGQSPYVLCRLFKKNDESIEVSNCGEVEQTNSAPIAANYSPEEIQSDPAPITASTSLITEDDMQLAVIPDISGETVSKAKTSVDCYSDGYVQNQFEKLAAEEDHALNFDIYYNPKDGLLLDDRLFSPVLAHMPPEFDYQANSESDGQCGFQYGTNELNISDFLDSNLNWDQVPCEESSSYPQNFPPLLNVKDNGSGSDSDAEVANMITCTQAAYPHEVIDRRIPFATTPSFCRTFDYNGDDQKSNVVLLQNNFQTSFPSDVNSGEVYNINAYDQPRNYNNTFISGESGIIIRARPAREEQFKPNLDQGNAERRIRLANAGRGSSRSSTQEKRSSKPIIAVEKKAAENHAADDESSTGTNHTYKKRKASKSVITRKISLLLGRAPVRLKTSSNCALWSSVFVVSVSVLVSLVAFTNIWGCIKF 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02672 580 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vivi3g02672 580 Gene3D NAC domain 31 177 IPR036093 GO:0003677|GO:0006355
Vivi3g02672 580 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Vivi3g02672 580 SUPERFAMILY NAC domain 15 172 IPR036093 GO:0003677|GO:0006355
Vivi3g02672 580 FunFam Nac domain-containing protein 86 31 175 - -
Vivi3g02672 580 MobiDBLite consensus disorder prediction 475 494 - -
Vivi3g02672 580 MobiDBLite consensus disorder prediction 502 524 - -
Vivi3g02672 580 MobiDBLite consensus disorder prediction 478 492 - -
Vivi3g02672 580 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02672 Vivi-Chr3 44741528 44744560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02672 15 474 NAC Transcription Factor Family AT4G35580 43.590 2.62e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g02672 NAM 4.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02672 - - vvo:131661222 1174.84