Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02653 ATGGAGCCTCTCAAAGCTGCGATTCCAGAGAAACTAAAACAACTGATTGGGGATAGCACTGTTCACACTCTTCGCGACTCATGTTCTTCTCTTCATAACTTCTTTCTTCATTTCGAACCATTTCACCAGATGGTGGCTGAACTTGCAGACCCTAGCTATGCTCTATGCGGCAAGAACAAAGAAACCGCATTGAAATATAAGCAGCTTGGTAACCAATGCTTCTCAAACGATGATTATGCCAAGGCTCTGGATTATTATACTCAGGCATTGCGTAGGGCTCCTTTTGAGGTTGGTGAAATTGAAAATAATCTGATTGCAACATTGTATATTAATCGAGCTACTGTATTGCATAAAATGAATCTTTTGGTAGAATGTTTGCGAGATTGCAATCGAGCTCTTCAGATATGTCCGAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATGTCTCCTTGGGAAATAATAGAGATGCGATCTGTGACCTAAATATAGCTAAGAGTGTCGAATCATCCACAGGTGGTAAGAAACAAATAGAAAGTGAGGTGAAAATTGTTTTAGACCAATCCAAAAGTGCAAATATAGCAGTACAGCCGCGACACAAGGAAAATAGCTTGAATACAGTGGGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCATGCCTGATAAAGGAAGAGGCACAGTGCCATCACATGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCTTATGCTACAATAATATTAAAGCAATGCCGGGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCATGCTCAATACCATTGTATTGCTCCCGCCAATGCCAGATAAAAGCAGGCGGGCAAATGTTCAGGATTTCCACAGAAGATAATCACATTCTTAAAAACTTACCCTGTGATCTTGGAGAATATGCTGCTGAAGTGATTCAGTATAAAGATTGTGAACAAAAGATTGATGATGTTACTGAACATCAACACGAATGTCAAGGGGTACATTGGTCTGCTGTACTGCCTTCTGAGATAGTTTTGGCTGGCAGAGTTCTAGCGAAGTTTTTGTCGAAGAGCTCGTCTGAAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGCTACGAACGTATGCCATTTGAAAGTAAATTGGATTCACATATATACGCCATTGTACTGTTATACTGTCTTAAACAGTCTTATACAACTATATTTTCCATTGATGGAATCTCTATATCACAGGCTGTCATAGTTATTTCTCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACGCTCATGGACTATCAGATCAGTCTGGAGGATTTCCATTTCATTCCAGTGCGCGTTTAACTAGTAATGTGGAACAGGTCAGAGTGGGCAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCGTATTTTCTTTCACGCACACTCTATTTACGAACAACAAAAGTTGTAGCAGCTGGGTGTCAGCTGGAATTGTCTTATGGTCCACAGGTTGGCTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTGAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCGTTGTGTCAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAGTGTGAAAAGCAGAAAATCATTGTTATCAAGAATGATGACATCTCTGAAGTATGTCTGAATGCATTTAACCAAAATGATGCCTCTGTTCATATTCAACCTGGGCATTGTTTAAAATGTGGTTCTTACTGTGATCTAGAGTCTTCACGTGCCACAGTTGATAAAGCCTTAATATGCATAAAAAGGTTGCAGGATGCAATATTGTCAAAAGAAATTTCAAATACTTTCATTTCAGACGCTTTGAGATCTCTTCATTTGCTAAGATCAAATTTGCATGCTTACAATAAGGTTATTGCAGAGGCTGAAGACAACCTTGCCCAAGCTTTTTGTTTAGTGGGAGAATTAAAAATATCTGTGAATCATTGTAAAGCATCTATTCAGATTCTGGAAAAGCTATATGGTCCTGATGATATTGTTATTGCCTATGAACTTGTGAAGCTTTCATCTGTCCAACTTTCCTTGGGTGACAATAGTGCTGTCGACAGCATTAGTCGAATAGGTGCTATCTTCTCACGTTATTATGGACTTCATGCAGACTTGGTCTTTCCTTACCTTCAGTACCTCAGGAGAGAAATTTAG 2316 0.3925 MEPLKAAIPEKLKQLIGDSTVHTLRDSCSSLHNFFLHFEPFHQMVAELADPSYALCGKNKETALKYKQLGNQCFSNDDYAKALDYYTQALRRAPFEVGEIENNLIATLYINRATVLHKMNLLVECLRDCNRALQICPSYSKAWYRRGKANVSLGNNRDAICDLNIAKSVESSTGGKKQIESEVKIVLDQSKSANIAVQPRHKENSLNTVGEMPQIKLQSVSMPDKGRGTVPSHDVSPGSLVHAEEPYATIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSRQCQIKAGGQMFRISTEDNHILKNLPCDLGEYAAEVIQYKDCEQKIDDVTEHQHECQGVHWSAVLPSEIVLAGRVLAKFLSKSSSEDITSFVEKLELSHCYERMPFESKLDSHIYAIVLLYCLKQSYTTIFSIDGISISQAVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSSARLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTKVVAAGCQLELSYGPQVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFRCVNPNCSGAVLESRVLECEKQKIIVIKNDDISEVCLNAFNQNDASVHIQPGHCLKCGSYCDLESSRATVDKALICIKRLQDAILSKEISNTFISDALRSLHLLRSNLHAYNKVIAEAEDNLAQAFCLVGELKISVNHCKASIQILEKLYGPDDIVIAYELVKLSSVQLSLGDNSAVDSISRIGAIFSRYYGLHADLVFPYLQYLRREI 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02653 771 SUPERFAMILY SET domain 220 546 IPR046341 -
Vivi3g02653 771 Gene3D Tetratricopeptide repeat domain 526 768 IPR011990 GO:0005515
Vivi3g02653 771 Gene3D Tetratricopeptide repeat domain 37 204 IPR011990 GO:0005515
Vivi3g02653 771 SUPERFAMILY TPR-like 58 166 IPR011990 GO:0005515
Vivi3g02653 771 SMART tpr_5 63 96 IPR019734 GO:0005515
Vivi3g02653 771 SMART tpr_5 140 173 IPR019734 GO:0005515
Vivi3g02653 771 SMART tpr_5 678 711 IPR019734 GO:0005515
Vivi3g02653 771 SMART tpr_5 106 139 IPR019734 GO:0005515
Vivi3g02653 771 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 770 - -
Vivi3g02653 771 Gene3D SET domain 415 520 IPR046341 -
Vivi3g02653 771 Pfam SET domain 460 521 IPR001214 GO:0005515
Vivi3g02653 771 Coils Coil 663 683 - -
Vivi3g02653 771 ProSiteProfiles SET domain profile. 213 521 IPR001214 GO:0005515
Vivi3g02653 771 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi3g02653 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02653 K24634 - gmx:100783548 1191.79