LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g02643	ATGGAAGCGCTTGTATGCAGAAAATTGGGCGACCCAACGGCCACCGTGGAATCCGATAACAGCTCAATCTTCGTATCCAAGAATCATCCAATCCCTGAATTCAATTCTCCCACATCGGTCAGAGTTAGAATCAAAGCCACAAGCTTGAATTTCGCTAATTATTTGCAGATTCTCGGCAAGTATCAGGAGAAACCACCTTTGCCATTCATTCCCGGATCCGATTTTTCAGGCATCGTTGATTCCGTTGGCTCCAAAGTTACCAATTTCCGTGTTGGAGATCCTGTTTGCTCCTTCGCTGCTCTTGGATCGTATGCTCAGTATATAGTTGTTGATCAGAACGATTTGTTTCGCGTGCCGGAAGGTTGTGATTTGGTTGCCGCTGGAGCACTTGCTGTGGCGTTTGGGACTTCTCATGTTGCACTTGCTCATAGAGCTCAGTTGAAATCTGGTCAGGTATTGTTGGTTTTGGGTGCAGCAGGTGGCGTAGGTCTTGCAGCTGTGCAAATTGGGAAAGCATGTGGAGCCATTGTCATTGCCGTTGCTAGGGGAGCTGAAAAGGTGCAGCTCTTGAAATCACTTGGTGTTGATCATGTGGTGGACTTGGGTAATGAAAATGTCATTGACAGTGTCAAAGAGTTCCTCAAGATCAGAAAGCTTAAAGGGGTTGATGTCCTGTATGACCCAGTTGGAGGCAAGCTTACTAAAGAATCTTTGAAGGTTCTGAAATGGGGAGCTCACATTCTAATAATTGGGTTTGCAAGTGGAGAAGTTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTACACGGGCTTTATTGGGGTAGTTATAAAATACACCGCCCAGCTGTTCTTGAAGATTCTATCAAGGAGCTACTGTCTTTGTTGGCAAAAGGCTTGATTTCCATTCATATTTCTCATTCTTACAGCTTGTCAGAGGCCAACCTTGCCTTCTCAGCCATCAAAGAAAGGAAAGTTATCGGGAAAGTGATGCTTGTATTTGATGAGAAAACTACAAGATCTAAGCTATGA	1041	0.4457	MEALVCRKLGDPTATVESDNSSIFVSKNHPIPEFNSPTSVRVRIKATSLNFANYLQILGKYQEKPPLPFIPGSDFSGIVDSVGSKVTNFRVGDPVCSFAALGSYAQYIVVDQNDLFRVPEGCDLVAAGALAVAFGTSHVALAHRAQLKSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQLLKSLGVDHVVDLGNENVIDSVKEFLKIRKLKGVDVLYDPVGGKLTKESLKVLKWGAHILIIGFASGEVPVIPANIALVKNWTVHGLYWGSYKIHRPAVLEDSIKELLSLLAKGLISIHISHSYSLSEANLAFSAIKERKVIGKVMLVFDEKTTRSKL	346

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g02643	346	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	122	287	IPR036291	-
	Vivi3g02643	346	Gene3D	-	35	331	-	-
	Vivi3g02643	346	SMART	PKS_ER_names_mod	18	335	IPR020843	GO:0016491
	Vivi3g02643	346	SUPERFAMILY	GroES-like	22	151	IPR011032	-
	Vivi3g02643	346	Pfam	Alcohol dehydrogenase GroES-like domain	38	98	IPR013154	-
	Vivi3g02643	346	PANTHER	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	1	335	-	-
	Vivi3g02643	346	Pfam	Zinc-binding dehydrogenase	161	300	IPR013149	-
	Vivi3g02643	346	CDD	QOR1	1	335	-	-
	Vivi3g02643	346	ProSitePatterns	Quinone oxidoreductase / zeta-crystallin signature.	150	171	IPR002364	GO:0008270\|GO:0016491
	Vivi3g02643	346	Gene3D	-	133	280	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g02643	Vivi-Chr3	44403516	44407598	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g02643	68	266	Monolignol Biosynthesis Gene Families	AT1G72680	26.695	5.47e-07	48.9

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g02643	K00344		-	gmx:100817700	565.844

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