Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02642 ATGATTCCTTGTACGAGCATTCGGTTACGGGCTAATTCTGGTTCTGGATACGAGGAAGTTGTGATCGGAAACGGTGGAGAGGGAGATCGGGTTGAGGAATTGAGCTGTAATGAGGTGATTGGTGGCCGTGGTTTGGTGTTGTCCGAGGAGGCTCGCCGTGCTATAGCGGAGGAGAGGGTTCCTCTTGTGTCTTTGGCCGATGTTGTCGGTGGTGGCGGTGGTGGTAGGGGTGGCTCCTCCAGTCACTCGAGGATTGATTTTCAGCGGATTGTGAAGCTTGTTGAACAGATTCTTCCTTTCTCCCTCTTGTTGTTGGTTGTTTTGATTCGCCAGCATTTGCAAGGTTTCTTTGTCACAATCACTGTATCAGCTGTAATGTTCAAGTCAAATGAAATTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAGTTTCTATTCTTCTTGGTGTCGCTTTTTCCTTCATGCTGTATGTGACATGCATTTACTGGTGGTATCGGAATGATGATATTTTACTTCCACTGGCCTTGTTTCCACCAAAAGCAACACCACCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGACATTTTGGTGCGGCAAGCGACAATGGCTTTCAAGTGTTTGTTGCTGCTTTACTACAAAAATGGCAGATGCCATAACTTCCGTCGACAGGCTCAAATGTTAACTCTGGTTGAGTACACACTGCTGTTATATCGTGCTTTCTTGCCAACACCAGTTTGGTACCGATTTTTCTTTAACAAGGACTTTGGAAGTCTCTTCTCATCATTGATCACAGGATTGTATATAACATTCAAGCTAACATCTGCAATTGAGAAAGTCCAATGTTTCATTCGTGCTTTAAAAGCGATGTCAAGAAAGGAAGTTCATTATGGGGTTTATGCCACAACAGAACAGGTAAGTGCTGCTGGTGATCTTTGCGCTATATGCCAAGAGAAGATGCATGATCCTATCCTGTTGTGCTGTAAACACATGTTCTGCGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAATGGACTTGCCCGTTATGCAGGACATCGGTAAAACATGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTTTGTTTTTTCAGCTGTTTTGA 1131 0.4385 MIPCTSIRLRANSGSGYEEVVIGNGGEGDRVEELSCNEVIGGRGLVLSEEARRAIAEERVPLVSLADVVGGGGGGRGGSSSHSRIDFQRIVKLVEQILPFSLLLLVVLIRQHLQGFFVTITVSAVMFKSNEIVKKQTALKGDQKVSILLGVAFSFMLYVTCIYWWYRNDDILLPLALFPPKATPPFWHAIFIILVNDILVRQATMAFKCLLLLYYKNGRCHNFRRQAQMLTLVEYTLLLYRAFLPTPVWYRFFFNKDFGSLFSSLITGLYITFKLTSAIEKVQCFIRALKAMSRKEVHYGVYATTEQVSAAGDLCAICQEKMHDPILLCCKHMFCEECVSEWFEREWTCPLCRTSVKHADLRTFGDGSTSLFFQLF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02642 376 SUPERFAMILY RING/U-box 305 358 - -
Vivi3g02642 376 Pfam Zinc finger, C3HC4 type (RING finger) 313 358 - -
Vivi3g02642 376 SMART ring_2 315 352 IPR001841 -
Vivi3g02642 376 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Vivi3g02642 376 ProSiteProfiles Zinc finger RING-type profile. 315 353 IPR001841 -
Vivi3g02642 376 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 70 376 IPR044235 GO:0061630|GO:1904294
Vivi3g02642 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02642 Vivi-Chr3 44364256 44369636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02642 12 376 C3H Transcription Factor Family AT5G01960 62.432 2.01e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02642 - K22379 gmx:100784614 530.02