Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02638 ATGCGACCTCATCGCCTTCATCTCAGAATGGAGGATATATTGGCGAGGGCGAAGTACGCGGTGGTGGAGAATGAGGATTACGGTAGCCTCATGTGTGAGCAATGTGGCACCGGGGAGCAGCCGGAGGAGTTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTGAGGCCGATTGTTGTGAGGATTCCAATTGGTTCTTGGATTTGCCCTAAGTGTTCAGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGAATTTGCCTGATTTCAGAAGGAATAATTCTTCTTCTTGGGGTTTATTGGTGGCATGA 351 0.4701 MRPHRLHLRMEDILARAKYAVVENEDYGSLMCEQCGTGEQPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFTQRRILDFFGLPRNLPDFRRNNSSSWGLLVA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02638 116 ProSiteProfiles Zinc finger PHD-type profile. 29 79 IPR019787 -
Vivi3g02638 116 SUPERFAMILY FYVE/PHD zinc finger 21 85 IPR011011 -
Vivi3g02638 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 90 IPR013083 -
Vivi3g02638 116 PANTHER PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1 27 76 IPR047157 -
Vivi3g02638 116 SMART PHD_3 31 77 IPR001965 -
Vivi3g02638 116 Pfam PHD-finger 31 77 IPR019787 -
Vivi3g02638 116 ProSitePatterns Zinc finger PHD-type signature. 32 76 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02638 Vivi-Chr3 44326423 44328539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02638 31 84 C2H2 Transcription Factor Family AT3G01460 38.889 2.87e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g02638 PHD 8.6e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02638 K24406 - vvo:131642456 212.231