Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02637 ATGGTCCAGCGACCTCATCGCCTTCATCTCAGAATGGAGGATATATTGGCGAGGGCGAAGTACGCGGTGGTGGAGAATGAGGATTACGGTAGCCTCATGTGTGAGCAATGTGGCACCGGGGAGCAGCCGGAGGAGTTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTGAGGCCGATTGTTGTGAGGATTCCAATTGGTTCTTGGATTTGCCCTAAGTGTTCAGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGAATTTGCCTGATTTCAGAAGGAATAATTCTTCTTCTTGGGGTTTATTGGTGGCATGA 357 0.4734 MVQRPHRLHLRMEDILARAKYAVVENEDYGSLMCEQCGTGEQPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFTQRRILDFFGLPRNLPDFRRNNSSSWGLLVA 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02637 118 PANTHER PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1 29 78 IPR047157 -
Vivi3g02637 118 SMART PHD_3 33 79 IPR001965 -
Vivi3g02637 118 CDD PHD_RSF1 33 78 - -
Vivi3g02637 118 ProSitePatterns Zinc finger PHD-type signature. 34 78 IPR019786 -
Vivi3g02637 118 SUPERFAMILY FYVE/PHD zinc finger 23 87 IPR011011 -
Vivi3g02637 118 Pfam PHD-finger 33 79 IPR019787 -
Vivi3g02637 118 ProSiteProfiles Zinc finger PHD-type profile. 31 81 IPR019787 -
Vivi3g02637 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02637 Vivi-Chr3 44326423 44328542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02637 33 86 C2H2 Transcription Factor Family AT3G01460 38.889 2.84e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g02637 PHD 8.9e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02637 K24406 - vvo:131642456 212.231