Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02619 ATGGAGAAAGAAAATGAGAAAGAGTTGGTGGAATTGTATGAGGCTGCCAAGAAAGCAGCGGATGCGTCTACCGACGCAGATAGTCCGCACGAAGAAAGCCGATGCCTTGATGCGCTCGAGCAGCTCAAGAAATTTCCTGTCAATTATAAAATTCTCGTCAATACCCAGGTAGGGAAACATCTTAAAAGTCTCACCAAGCACCCCAGGCAGAAAATTCGGGCTTTTGCTGTTGACTTAATTGAGATATGGAAAGGCATAATCATCAAGGAAACAAGTAAAAATAAATCTGGGCCCTCAGATTCTAAGGTTGAGTCAACAAATGGGGAGAGAGCTAAAGCTGGGAAATTGCAAAAGAGTCCTTCGGTGAAGGTTGAGAAAGGAGAAAGTGTCAAAGTAGAAAAAGTTAATGGGAATGGTGCATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTGATCGTTCTTCAAGCGTCAAGGTGGAAAAGATAGCCAAGGAGGAAACACATGTTTCTGTAGCAAAGAAAATTTCATCCAGCTCTGCTGCTCCCCCAAAGCTGAAGACAATGATCAAATCTAATGATTCAGCACGAGACAAAATAAGGGAACTTCTCGGAGATGCTTTATCTAAGGTTTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTAAATGCATGTGACCCAATTCGTGTTGCAGTTACAGTGGAGTCTCTGTTATTTGAAAAGTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTACAGGTCATTAATGTTTAATCTTAAGGATCAGAATAACCCAGATTTCCGAAGAAAAGTTCTGCTCGGAATTGTTGAGCCGCAGCGGCTTGTCGACATGACTTCAGCAGAAATGGCCAGTGAACAAAGGAAGCAGCAGATTGAGAAACTCGAGAAGAAAGCTTTGTTTGAATGTGAGCGTGGAGGTGCACCAAAAGCTACTACTGATCAATTTAAATGTGGTAGGTGTGGTCAAAGGAAAACCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACGTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1119 0.4218 MEKENEKELVELYEAAKKAADASTDADSPHEESRCLDALEQLKKFPVNYKILVNTQVGKHLKSLTKHPRQKIRAFAVDLIEIWKGIIIKETSKNKSGPSDSKVESTNGERAKAGKLQKSPSVKVEKGESVKVEKVNGNGASKLSSGNVKAQNVDVKIEKTDRSSSVKVEKIAKEETHVSVAKKISSSSAAPPKLKTMIKSNDSARDKIRELLGDALSKVFEEADEDMMDEVNACDPIRVAVTVESLLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGIVEPQRLVDMTSAEMASEQRKQQIEKLEKKALFECERGGAPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02619 372 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 28 102 IPR035441 -
Vivi3g02619 372 Coils Coil 294 314 - -
Vivi3g02619 372 CDD Zn-ribbon_TFIIS 325 371 - -
Vivi3g02619 372 ProSiteProfiles TFIIS central domain profile. 204 327 IPR003618 GO:0006351
Vivi3g02619 372 SUPERFAMILY Elongation factor TFIIS domain 2 191 302 IPR036575 GO:0006351
Vivi3g02619 372 Pfam Transcription factor S-II (TFIIS), central domain 201 318 IPR003618 GO:0006351
Vivi3g02619 372 Gene3D - 179 300 IPR036575 GO:0006351
Vivi3g02619 372 SUPERFAMILY Zinc beta-ribbon 312 370 - -
Vivi3g02619 372 SMART TFS2_5 12 89 IPR003617 GO:0005634
Vivi3g02619 372 ProSiteProfiles Zinc finger TFIIS-type profile. 330 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02619 372 MobiDBLite consensus disorder prediction 93 126 - -
Vivi3g02619 372 Pfam TFIIS helical bundle-like domain 38 87 IPR017923 -
Vivi3g02619 372 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 372 - -
Vivi3g02619 372 ProSitePatterns Zinc finger TFIIS-type signature. 334 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02619 372 FunFam Probable Transcription elongation factor S-II 301 372 - -
Vivi3g02619 372 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 101 IPR035441 -
Vivi3g02619 372 SMART mid_6 202 310 IPR003618 GO:0006351
Vivi3g02619 372 SMART Cys4_2 332 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02619 372 PIRSF TFIIS 4 372 IPR035100 -
Vivi3g02619 372 ProSiteProfiles TFIIS N-terminal domain profile. 14 90 IPR017923 -
Vivi3g02619 372 CDD TFIIS_I 13 87 - -
Vivi3g02619 372 Pfam Transcription factor S-II (TFIIS) 332 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02619 372 Gene3D - 301 372 - -
Vivi3g02619 372 NCBIfam transcription elongation factor S-II 25 372 IPR006289 GO:0003676|GO:0005634|GO:0006368
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02619 Vivi-Chr3 44139165 44143086 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi3g02619 TFIIS_M 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02619 K03145 - gmx:100811982 569.696