Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02618 ATGTACTTCTCTCGTTATTTTCTGCTCCTTTCTTTTCTTTCGCTTCACTTCCCGCACAGCCGCAGCCGCAGAAAGCAACAACAAGTACCATTCAGAAAGTGGCTGGGTTCGATGGAGAAAGAAAATGAGAAAGAGTTGGTGGAATTGTATGAGGCTGCCAAGAAAGCAGCGGATGCGTCTACCGACGCAGATAGTCCGCACGAAGAAAGCCGATGCCTTGATGCGCTCGAGCAGCTCAAGAAATTTCCTGTCAATTATAAAATTCTCGTCAATACCCAGGTAGGGAAACATCTTAAAAGTCTCACCAAGCACCCCAGGCAGAAAATTCGGGCTTTTGCTGTTGACTTAATTGAGATATGGAAAGGCATAATCATCAAGGAAACAAGTAAAAATAAATCTGGGCCCTCAGATTCTAAGGTTGAGTCAACAAATGGGGAGAGAGCTAAAGCTGGGAAATTGCAAAAGAGTCCTTCGGTGAAGGTTGAGAAAGGAGAAAGTGTCAAAGTAGAAAAAGTTAATGGGAATGGTGCATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTGATCGTTCTTCAAGCGTCAAGGTGGAAAAGATAGCCAAGGAGGAAACACATGTTTCTGTAGCAAAGAAAATTTCATCCAGCTCTGCTGCTCCCCCAAAGCTGAAGACAATGATCAAATCTAATGATTCAGCACGAGACAAAATAAGGGAACTTCTCGGAGATGCTTTATCTAAGGTTTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTAAATGCATGTGACCCAATTCGTGTTGCAGTTACAGTGGAGTCTCTGTTATTTGAAAAGTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTACAGGTCATTAATGTTTAATCTTAAGGATCAGAATAACCCAGATTTCCGAAGAAAAGTTCTGCTCGGAATTGTTGAGCCGCAGCGGCTTGTCGACATGACTTCAGCAGAAATGGCCAGTGAACAAAGGAAGCAGCAGATTGAGAAACTCGAGAAGAAAGCTTTGTTTGAATGTGAGCGTGGAGGTGCACCAAAAGCTACTACTGATCAATTTAAATGTGGTAGGTGTGGTCAAAGGAAAACCACCTATTACCAAATGCAGACTCGTAGTGCTGATGAACCTATGACAACGTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1230 0.4268 MYFSRYFLLLSFLSLHFPHSRSRRKQQQVPFRKWLGSMEKENEKELVELYEAAKKAADASTDADSPHEESRCLDALEQLKKFPVNYKILVNTQVGKHLKSLTKHPRQKIRAFAVDLIEIWKGIIIKETSKNKSGPSDSKVESTNGERAKAGKLQKSPSVKVEKGESVKVEKVNGNGASKLSSGNVKAQNVDVKIEKTDRSSSVKVEKIAKEETHVSVAKKISSSSAAPPKLKTMIKSNDSARDKIRELLGDALSKVFEEADEDMMDEVNACDPIRVAVTVESLLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGIVEPQRLVDMTSAEMASEQRKQQIEKLEKKALFECERGGAPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02618 409 CDD TFIIS_I 50 124 - -
Vivi3g02618 409 CDD Zn-ribbon_TFIIS 362 408 - -
Vivi3g02618 409 ProSiteProfiles TFIIS N-terminal domain profile. 51 127 IPR017923 -
Vivi3g02618 409 FunFam Probable Transcription elongation factor S-II 338 409 - -
Vivi3g02618 409 Pfam TFIIS helical bundle-like domain 75 124 IPR017923 -
Vivi3g02618 409 ProSiteProfiles Zinc finger TFIIS-type profile. 367 407 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02618 409 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 65 139 IPR035441 -
Vivi3g02618 409 SUPERFAMILY Zinc beta-ribbon 349 407 - -
Vivi3g02618 409 Coils Coil 331 351 - -
Vivi3g02618 409 Pfam Transcription factor S-II (TFIIS) 369 407 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02618 409 NCBIfam transcription elongation factor S-II 62 409 IPR006289 GO:0003676|GO:0005634|GO:0006368
Vivi3g02618 409 Gene3D - 338 409 - -
Vivi3g02618 409 Pfam Transcription factor S-II (TFIIS), central domain 238 355 IPR003618 GO:0006351
Vivi3g02618 409 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 35 138 IPR035441 -
Vivi3g02618 409 PIRSF TFIIS 41 409 IPR035100 -
Vivi3g02618 409 SMART mid_6 239 347 IPR003618 GO:0006351
Vivi3g02618 409 SMART Cys4_2 369 408 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02618 409 ProSitePatterns Zinc finger TFIIS-type signature. 371 406 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vivi3g02618 409 SUPERFAMILY Elongation factor TFIIS domain 2 228 339 IPR036575 GO:0006351
Vivi3g02618 409 ProSiteProfiles TFIIS central domain profile. 241 364 IPR003618 GO:0006351
Vivi3g02618 409 SMART TFS2_5 49 126 IPR003617 GO:0005634
Vivi3g02618 409 MobiDBLite consensus disorder prediction 130 163 - -
Vivi3g02618 409 Gene3D - 222 337 IPR036575 GO:0006351
Vivi3g02618 409 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 27 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02618 Vivi-Chr3 44139082 44143086 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi3g02618 TFIIS_M 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02618 K03145 - gmx:100811982 596.66