Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02617 ATGAGTGATGTTGTTTCTGCCTCCAAGAAGAAGTTGCTCATTAAGGAGCTTCTTCAGGGTCAAGAGTATGCTACTCAGCTGAAGTTTCTGCTTAAGAATCGTGTTGGTTTAGGTTCTGATGGGTCTGCTTCGGTTAAGGAATTGGCAGCTAATGTGCTGAGATCTTTCTCTGAGACTATTTCTGTGGTGACTTCTGAAGGTTGTAATTTTGATGAGGTTGCTTCAGAGGAAAATGGTTCATTGGTTTCTGCTTCTTGTAATGATGATGTGAAATCTGAAGATTCAAGTGAGAGTAAGAAGAGATTGTTACCTAATAACACTAAAGATCGAAGAGGTTCCTACAAAAGAAGGAAGACTGATGAGACAAGAACCATAGTCTCTAAAACAACTGGTGACATTCATTCCTGGAGAAAGTACGGACAGAAGGAAATCCTCAATTCTCAATTTCCTAGGAGCTACTTCAGATGTACCCGGAAGCATGATCAAGGTTGCAAAGCAACCAAACAGGTACAATTGATACAAGAGAATCCAGAAACATACCAAATTACATACATTGGGTTTCACACATGCAATGCCACTCTACATACTCCACAAATGGTCACATTTTCTTCAGATACCAATTGGGACACATTTCTTGTGAATTCTCAACCTCACTCAAAAGAAGTTCTTACAAATTATATTCAACAGGATTCTCCTATTATGAGCTCAGAAAGAGCAATTGTGAAACAAGAATATCCGAACAATGACGACAGTACTACTACTCCGAGGAGTGTTCTCGCGGATGATTTATTCGAAGCTAACTTGTGGTCTGATTTTAAGGATTTTGAACTATCCAAGCCAGATGCTAGTGTGTATTCATGTAGTGAATCTCAAAACCTTGAAATTGGTTTTGGGGTGTTTTCTGATTTCAGCAATGATTTAGTATATTTTGATGAAAGGCATTTGCTATAA 951 0.3849 MSDVVSASKKKLLIKELLQGQEYATQLKFLLKNRVGLGSDGSASVKELAANVLRSFSETISVVTSEGCNFDEVASEENGSLVSASCNDDVKSEDSSESKKRLLPNNTKDRRGSYKRRKTDETRTIVSKTTGDIHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCKATKQVQLIQENPETYQITYIGFHTCNATLHTPQMVTFSSDTNWDTFLVNSQPHSKEVLTNYIQQDSPIMSSERAIVKQEYPNNDDSTTTPRSVLADDLFEANLWSDFKDFELSKPDASVYSCSESQNLEIGFGVFSDFSNDLVYFDERHLL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02617 316 Pfam WRKY DNA -binding domain 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g02617 316 Gene3D WRKY domain 116 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g02617 316 ProSiteProfiles WRKY domain profile. 132 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g02617 316 MobiDBLite consensus disorder prediction 84 122 - -
Vivi3g02617 316 MobiDBLite consensus disorder prediction 90 122 - -
Vivi3g02617 316 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 211 IPR044810 GO:0003700
Vivi3g02617 316 SUPERFAMILY WRKY DNA-binding domain 128 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g02617 316 SMART WRKY_cls 130 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02617 Vivi-Chr3 44098359 44100572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02617 8 232 WRKY Transcription Factor Family AT3G56400 43.043 2.60e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g02617 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02617 - - tpra:123913408 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01353 7 68290841 68296952 Vivi3g02617 3 44098359 44100572 PCT