Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02613 ATGGCTTCTGCTTCATCTTCAAGTTCTTCAAATTGGGTCATGGAAAGTGGTGACATTCCTCATGTTCTTGCTGTTGATGATAGTCTTATTGATCGCAAACTTGTTGAGAAACTCCTTAGAAATTCCTCTTGCAGAGTTACAACTGCTGAGAATGGGCTTAGGGCATTGGAGTTATTGGGCTTGACAAATGGTGAACACAACACCTTGAATGGAAGATCCAAAGTAAACTTAATCATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTTAAGAAAATCAAGCAATCATCTGTAATGAGGGAGGTCCCAGTGGTAATCATGTCATCTGAGAACATACCAACAAGAATCAACAAGTGTCTAGAAGAAGGAGCTGAAATGTTCATGCTAAAGCCACTCAAACAATCTGATGTAAGAGAACTGACATGTCAGTTAATGAATCTAGGAAGGTGA 459 0.4009 MASASSSSSSNWVMESGDIPHVLAVDDSLIDRKLVEKLLRNSSCRVTTAENGLRALELLGLTNGEHNTLNGRSKVNLIITDYCMPGMTGYELLKKIKQSSVMREVPVVIMSSENIPTRINKCLEEGAEMFMLKPLKQSDVRELTCQLMNLGR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02613 152 ProSiteProfiles Response regulatory domain profile. 21 148 IPR001789 GO:0000160
Vivi3g02613 152 Gene3D - 21 152 - -
Vivi3g02613 152 SMART REC_2 20 144 IPR001789 GO:0000160
Vivi3g02613 152 CDD REC_typeA_ARR 22 143 - -
Vivi3g02613 152 SUPERFAMILY CheY-like 20 149 IPR011006 -
Vivi3g02613 152 FunFam Two-component response regulator ORR5 20 150 - -
Vivi3g02613 152 Pfam Response regulator receiver domain 22 142 IPR001789 GO:0000160
Vivi3g02613 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 147 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02613 Vivi-Chr3 44047493 44049226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02613 21 149 Response Regulator Gene Family AT3G56380 72.519 4.82e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi3g02613 Response_reg 9.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02613 K14492 - gmx:100499827 261.151