Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02609 ATGTTTAGTGTGAAGAAAATGGAAGCTTCATCAAATATGAGAGTTATGAGATTTTTTCTCGTGTTCTTACTGTTTCTGGTGACGGTGACAGCTGTTAGCCCCTCTTTAAACGACGACGTTTTGGGGCTGATTGTGTTCAAAGCTGATATACAAGATCCGAAGGGAAAGTTAGCATCTTGGAATGAAGATGATGAAAGTGCTTGCAGTGGTAGTTGGGTTGGTGTGAAATGCAACGCTAGATCTAATAGAGTGGTGGAGGTTAACCTGAATGGGTTTTCTTTATCTGGAAGAATTGGTCGTGGTTTGCAGCGTTTGCAGTTTCTTCATAGGCTTTATTTGGCGAATAACAATCTTACAGGGAGTATAACTCCTAATATTGCTACTATTGATAACCTTAGGGTTCTTGATTTGAGTAATAATAATCTTTCAGGGGTTGTTCCTGATGATTTTTTTCGACAATGTGGGTCGATGAGAGTTGTTTCTTTCGCGGGGAATTTGTTTTCTGGGAACATACCTTCTAGTTTAGGGTCATGTTCAGCTGTTGCTACAATTGACCTTTCTGGTAACCAGTTTGAGGGTAATGTTCCTAAGGAGATTTGGAGTTTGAGTGGACTTAGGTCTCTTGATTTGTCTGATAATTTGTTGGAAGGTGAGATTCCGGAAGGTGTTGAGGCGTTGAAGAATTTGAGAAGTGTTGACTTAGCTAGGAATAGCTTTTCTGGGAAGATACCTTATGGGTTTGGAAGTTGTTTGCTTTTGAGGTCTATTGATTTTGGTGAGAATTCTTTCTCTGGTAGTATTCCTGGGGATTTGAAGGATTTGGTGTTGTGTGGTTACTTTAGTTTGCGTGGAAACGCTTTCTCAGGAGATGTTCCTGAGTGGATTGGAGAGATGAAGGGTCTTCAGACATTGGATCTTTCTCGGAATAGATTTTCTGGTTCGGTGCCGAATTCTTTAGGAAAGCTTTGGTCAATGAAAACATTGAATCTTTCTGGAAATGGTTTCACGGGCAATCTTCCTGAATCCATGGTGAATTGCACAAACCTTTTGGCTTTGGATGTTAGCCAAAATTCATTGTCTGGAGATCTTCCTTCTTGGATTTTTGGGTCGGATTTGGAGAAGGTCTCGATGGCAGATAACAAAATGAGTGTTAGGGTGAAAAGCCCTTTGTATTCCTCGACTGAAGTTATGGTTCAGAGTCTTCAAGTTTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCTCTTCTGCTGTTTCATATTTAAGCAGCTTGCAGGTTTTGAATTTATCATATAACTCTTTGGGGGGTCATATTCCGGCTTCAATCGGTGATTTGAGAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCTCGGGAAATTGGGGGAGCTCTTTCCTTGAAAGAACTTAATTTGGAAAACAACTTCCTTATTGGGAAAATCCCAATTTCAATTGAGAACTGCTCTTCATTAACAACTTTGATTCTGTCGAAGAACAAGCTGAGTGGGTCAATACCAGCAGCAGTTGCAAAACTCACCAACTTGAAAACTGTTGACATATCAGTCAACAATCTTAATGGAAGCCTTCCTAAACAATTGGCCAACCTTCCCAATCTCCTGACCTTCAATTTATCTCACAATAATCTTCAGGGCGAACTGCCAGCTGGTGGTTTCTTTAACACCATTTCACCTTCCGCCGTAGCTGGCAATCCATTTCTTTGTGGCTCTATTGTAAACATAAAATGCCCTGTGCGGCTCCCAAAGCCTATTGTTCTGAATCCCAACTTTTCTGGTGACTCTGACCCAGGGTCGCCTACTCCAATGTCGGGTCACAAGAGAAATATTCTCAGCATTTCAGCACTCATTGCCATCGGTGCAGCCGCTTTCATTGTAATCGGTGTCATTGGCATCACTGTTCTCAACCTCCGTGTTCGGTCTGCCGCATCTCGTTCTCCAGTGGCCCTTGATTTTTCCGCAGGGGATGATTATAGCCGTTCGCCAACCACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAACCTGATTTCAGCTCTGGTGCACATGCTTTGCTTAACAAAGATTGCGAGCTTGGGCGTGGAGGATTTGGTGCTGTGTACCAAACAGTACTAGGAGATGGTCGTTCAGTTGCTATAAAGAAGCTCACCGTGTCGAGCCTTGTCAAGTCACAAGAAGATTTCGAGAGGGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTTGTTGAACTCGAAGGCTATTATTGGACTTCCTCACTTCAACTCCTCATATACGAGTTCGTCTCTCGCGGTAGCCTTTACAAGCATCTCCATGAAGGATCAGGCGAAAACTTCCTTTCATGGAACGAGAGGTTTCACGTCATTCTCGGTTCAGCGAAGGCCTTAGCTCACTTGCATCACTCCAACATTATTCACTACAACATTAAGTCAACCAACATCCTTATCGATAGCTACGGCGAACCTAAGGTTGGCGATTACGGCCTAGCAAGGCTACTACCAATGCTTGACCGCTATGTCTTGAGCAGCAAAATTCAAAGCGCACTCGGCTACATGGCACCGGAGTTCGCCTGCAAAACAGTGAAAATCACTGAGAAATGCGATGTTTATGGATTCGGAGTTTTGGTTTTGGAGATTGTGACAGGGAAAAGGCCTGTAGAGTATATGGAAGATGATGTTGTTGTACTCTGTGACATGGTTAGAGGAGCATTGGATGAAGGGAGAGTGGAGGAATGTATTGATGAGAGGCTACTAGGAAAGTTTCCAGTAGAAGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTACCATCTAATAGGCCAGAAATGGGAGAGGTAGTTACCATATTGGAGCTTATAAGATGCCCTTCAGAAGGACAAGAAGAGTTGCTGGGATGA 2952 0.4265 MFSVKKMEASSNMRVMRFFLVFLLFLVTVTAVSPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACSGSWVGVKCNARSNRVVEVNLNGFSLSGRIGRGLQRLQFLHRLYLANNNLTGSITPNIATIDNLRVLDLSNNNLSGVVPDDFFRQCGSMRVVSFAGNLFSGNIPSSLGSCSAVATIDLSGNQFEGNVPKEIWSLSGLRSLDLSDNLLEGEIPEGVEALKNLRSVDLARNSFSGKIPYGFGSCLLLRSIDFGENSFSGSIPGDLKDLVLCGYFSLRGNAFSGDVPEWIGEMKGLQTLDLSRNRFSGSVPNSLGKLWSMKTLNLSGNGFTGNLPESMVNCTNLLALDVSQNSLSGDLPSWIFGSDLEKVSMADNKMSVRVKSPLYSSTEVMVQSLQVLDLSHNAFSGEISSAVSYLSSLQVLNLSYNSLGGHIPASIGDLRTCSSLDLSYNKLNGSIPREIGGALSLKELNLENNFLIGKIPISIENCSSLTTLILSKNKLSGSIPAAVAKLTNLKTVDISVNNLNGSLPKQLANLPNLLTFNLSHNNLQGELPAGGFFNTISPSAVAGNPFLCGSIVNIKCPVRLPKPIVLNPNFSGDSDPGSPTPMSGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSAASRSPVALDFSAGDDYSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGENFLSWNERFHVILGSAKALAHLHHSNIIHYNIKSTNILIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLLGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSEGQEELLG 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02609 983 Pfam Leucine rich repeat N-terminal domain 37 78 IPR013210 -
Vivi3g02609 983 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 693 775 - -
Vivi3g02609 983 Gene3D Transferase(Phosphotransferase) domain 1 776 980 - -
Vivi3g02609 983 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 318 592 - -
Vivi3g02609 983 Pfam Leucine Rich Repeat 472 494 IPR001611 GO:0005515
Vivi3g02609 983 Pfam Leucine Rich Repeat 131 150 IPR001611 GO:0005515
Vivi3g02609 983 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 333 971 - -
Vivi3g02609 983 SUPERFAMILY Protein kinase-like (PK-like) 702 974 IPR011009 -
Vivi3g02609 983 SUPERFAMILY L domain-like 66 317 - -
Vivi3g02609 983 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Vivi3g02609 983 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
Vivi3g02609 983 PRINTS Leucine-rich repeat signature 132 145 - -
Vivi3g02609 983 PRINTS Leucine-rich repeat signature 422 435 - -
Vivi3g02609 983 CDD STKc_IRAK 705 971 - -
Vivi3g02609 983 Pfam Protein tyrosine and serine/threonine kinase 701 908 IPR001245 GO:0004672|GO:0006468
Vivi3g02609 983 Gene3D Ribonuclease Inhibitor 34 96 IPR032675 -
Vivi3g02609 983 Gene3D Ribonuclease Inhibitor 97 328 IPR032675 -
Vivi3g02609 983 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 37 317 - -
Vivi3g02609 983 Gene3D Ribonuclease Inhibitor 329 591 IPR032675 -
Vivi3g02609 983 SUPERFAMILY L domain-like 253 604 - -
Vivi3g02609 983 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Vivi3g02609 983 Pfam Leucine rich repeat 400 459 IPR001611 GO:0005515
Vivi3g02609 983 Pfam Leucine rich repeat 281 334 IPR001611 GO:0005515
Vivi3g02609 983 ProSiteProfiles Protein kinase domain profile. 699 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02609 983 SMART LRR_typ_2 542 566 IPR003591 -
Vivi3g02609 983 SMART LRR_typ_2 422 446 IPR003591 -
Vivi3g02609 983 SMART LRR_typ_2 129 152 IPR003591 -
Vivi3g02609 983 SMART LRR_typ_2 298 321 IPR003591 -
Vivi3g02609 983 SMART LRR_typ_2 202 226 IPR003591 -
Vivi3g02609 983 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 776 977 - -
Vivi3g02609 983 Gene3D Phosphorylase Kinase; domain 1 693 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02609 Vivi-Chr3 44007256 44011522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02609 16 981 Receptor kinase-like Gene Family AT3G56370 66.427 0.0 1244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vivi3g02609 PK_Tyr_Ser-Thr 8.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02609 - - mtr:25489825 1678.69