Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02608 ATGTCCTCCGATGACATCAATCTCGGTCCTGATCAGAGAATCGAAAACGGCCTCACTTCCCCCCTCGTCTTCCAAGACGACACTTTACGCTTCAACTGCGACGGTGCACCACCGCGGCAGGTCGGCGATCCGGTTCTTAAACCCCGGGAAGTTGGCGGTTTCATTGACGACAAGATGTTCACTGTAAATCGCGATCGCTTTTTCACCTCCCAGGGCGCCGAGTTCCGCCGCAACGTTTTTGCTGATCGGTCCGACCATAGGGATACTTCAGATGTACTGAACTGGAGCGCCGGAACTTCCAGTAGCGACGATTCGGACGGAGAAGACGATGAAGATGACGATGAAGGCGAAGATGGCGGCGAAGGCGTCAGTATCGGCGACGGGAGCAACCGGAGTTCAAATGCAATAATTGATGTTAACAATAACAGCGGCGTCGGAGTTGTAATTGGAAAATCCCAGCATCATTCCCCTTATGTTTCTGGTAGAGAGATGTTGGGAAAGGACGGTGAGATTGTACAGTTGGTGCATAACCATGCGAGTGATAGTGTTGGTGGAGATCATCAGCGAGAAAGATTCGGTAAAACTCAGAATTCTGCAACTGTTGCTGAAGCTGATTGTGAGGAGTATTATTCCCACTATCTTCAAGGTACGGAAGGGTCGCCTTCTGTACAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGAATGCTGTGTATTCAAGCGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACTGGAACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCTTTTGGCGGAGGTGGAGTACAGCATGTTATTAGAATGAAAGCTTGTTGTACTTGCTCTCATCCCACACTGGAGGAATCAATATCTCCAAATCTTTCACTTCAAGCTGCTGTGCAGGCGTACCGTCGGGAAGAGGAATCACAATTTTACCGGTCATCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTAGGAGAGTGTGCTGTTTTTGAACCACCAAGGAACAGAGGTGTTCAATTTCCATTTGCTGTGACAGACAGGGTTATCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGAAGGGAAGCTATTGTAACAACACAATGCCTGAATGGGTGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCTAAGGTTTCTGATGATCCTTCAAAACTTGTCTCCAGCAACACGGGACCTAATTGGCTTCAGATCAGCCGCACACCATCATAA 1311 0.4714 MSSDDINLGPDQRIENGLTSPLVFQDDTLRFNCDGAPPRQVGDPVLKPREVGGFIDDKMFTVNRDRFFTSQGAEFRRNVFADRSDHRDTSDVLNWSAGTSSSDDSDGEDDEDDDEGEDGGEGVSIGDGSNRSSNAIIDVNNNSGVGVVIGKSQHHSPYVSGREMLGKDGEIVQLVHNHASDSVGGDHQRERFGKTQNSATVAEADCEEYYSHYLQGTEGSPSVQKVMVDDNGCGFSGRKNAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGVQHVIRMKACCTCSHPTLEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERFDQGGLGECAVFEPPRNRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKLVSSNTGPNWLQISRTPS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02608 436 MobiDBLite consensus disorder prediction 415 436 - -
Vivi3g02608 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Vivi3g02608 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 88 420 - -
Vivi3g02608 436 SUPERFAMILY RING/U-box 249 321 - -
Vivi3g02608 436 MobiDBLite consensus disorder prediction 103 121 - -
Vivi3g02608 436 MobiDBLite consensus disorder prediction 86 137 - -
Vivi3g02608 436 ProSiteProfiles U-box domain profile. 250 322 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02608 Vivi-Chr3 43989165 43994109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02608 198 429 Plant U-box Gene Family AT5G05230 59.414 1.56e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02608 - - gmx:100791099 539.65