LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g02607	ATGTCCTCCGATGACATCAATCTCGGTCCTGATCAGAGAATCGAAAACGGCCTCACTTCCCCCCTCGTCTTCCAAGACGACACTTTACGCTTCAACTGCGACGGTGCACCACCGCGGCAGGTCGGCGATCCGGTTCTTAAACCCCGGGAAGTTGGCGGTTTCATTGACGACAAGATGTTCACTGTAAATCGCGATCGCTTTTTCACCTCCCAGGGCGCCGAGTTCCGCCGCAACGTTTTTGCTGATCGGTCCGACCATAGGGATACTTCAGATGTACTGAACTGGAGCGCCGGAACTTCCAGTAGCGACGATTCGGACGGAGAAGACGATGAAGATGACGATGAAGGCGAAGATGGCGGCGAAGGCGTCAGTATCGGCGACGGGAGCAACCGGAGTTCAAATGCAATAATTGATGTTAACAATAACAGCGGCGTCGGAGTTGTAATTGGAAAATCCCAGCATCATTCCCCTTATGTTTCTGGTAGAGAGATGTTGGGAAAGGACGGTGAGATTGTACAGTTGGTGCATAACCATGCGAGTGATAGTGTTGGTGGAGATCATCAGCGAGAAAGATTCGGTAAAACTCAGAATTCTGCAACTGTTGCTGAAGCTGATTGTGAGGAGTATTATTCCCACTATCTTCAAGGTACGGAAGGGTCGCCTTCTGTACAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGAATGCTGTGTATTCAAGCGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACAAAGCTTGTTGTACTTGCTCTCATCCCACACTGGAGGAATCAATATCTCCAAATCTTTGCGTACCGTCGGGAAGAGGAATCACAATTTTACCGGTCATCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTAGGAGAGTGTGCTGTTTTTGAACCACCAAGGAACAGAGGTGTTCAATTTCCATTTGCTGTGACAGACAGGGTTATCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGAAGGGAAGCTATTGTAACAACACAATGCCTGAATGGGTGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCTAAGGTTTCTGATGATCCTTCAAAACTTGTCTCCAGCAACACGGGACCTAATTGGCTTCAGATCAGCCGCACACCATCATAA	1209	0.4748	MSSDDINLGPDQRIENGLTSPLVFQDDTLRFNCDGAPPRQVGDPVLKPREVGGFIDDKMFTVNRDRFFTSQGAEFRRNVFADRSDHRDTSDVLNWSAGTSSSDDSDGEDDEDDDEGEDGGEGVSIGDGSNRSSNAIIDVNNNSGVGVVIGKSQHHSPYVSGREMLGKDGEIVQLVHNHASDSVGGDHQRERFGKTQNSATVAEADCEEYYSHYLQGTEGSPSVQKVMVDDNGCGFSGRKNAVYSSESGESLRAILSDPVTKLVVLALIPHWRNQYLQIFAYRREEESQFYRSSKRRRERFDQGGLGECAVFEPPRNRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKLVSSNTGPNWLQISRTPS	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g02607	402	MobiDBLite	consensus disorder prediction	103	121	-	-
	Vivi3g02607	402	MobiDBLite	consensus disorder prediction	381	402	-	-
	Vivi3g02607	402	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED	88	260	-	-
	Vivi3g02607	402	MobiDBLite	consensus disorder prediction	86	137	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g02607	Vivi-Chr3	43989165	43994111	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g02607	21	395	Plant U-box Gene Family	AT5G05230	33.967	7.03e-41	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g02607	-		-	gmx:100791099	422.55