Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02578 ATGGTAACTGTTAGTAACATTGGTTTCTCTTCATTATTCAGAGTTTCTTTGAACACAGAGGTGGTTTCAAAGCAGAGGAAACACAAATCATCATGCAGTTTTAGGATTCCCCTGAACAAAATCTGTTGTAAACTATCAGAAAGTGGGATTGAAGAGAGTCCTGTCACCAAAAAGGTATCTACTAAATCTAAGGATATGATGGAACAATACAATATAGCTATGAAGAGCATGATGAGGAATCCTTATGAGTATCATCATGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCTCAACCACAGAAGCCTGAAGATGTAGATCATCTTAAGAATGAAGAAGGTGTGGCATACATTCTAAACTTGCAACAGGATAAAGATGCTGAGTTTTGGGGAATAGACTTGCAGTCGATAATAAAAAGGTGTCGCGAAATTGAAATTCGGCACATGAGGAGACCGGCAGTAGACTTTGATCCAAACTCTTTGCGAAATGCATTACCTAAAGCAGTTTCATCTTTGGAATGGGCGATTTCTGAGGGAAAAGGAAAAGTTTATGTGCATTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTAGCAATATCATATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCATATGATATGCTAACTTCAAAGAGACCTTGCGGACCGAATAAAAAAGCGATACGTGGAGCTACTTATGATCTGGCTAAGAATGATCCATGGAAGGAGCCGTTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCTGATTGGGAGAGGAACCTGATTCAAAATGGTGTCCGTGCTCTTCGTGGAACTTGA 846 0.396 MVTVSNIGFSSLFRVSLNTEVVSKQRKHKSSCSFRIPLNKICCKLSESGIEESPVTKKVSTKSKDMMEQYNIAMKSMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKNEEGVAYILNLQQDKDAEFWGIDLQSIIKRCREIEIRHMRRPAVDFDPNSLRNALPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAISYLFWFCDMNLNEAYDMLTSKRPCGPNKKAIRGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNGVRALRGT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02578 281 Gene3D Protein tyrosine phosphatase superfamily 74 281 IPR029021 -
Vivi3g02578 281 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 18 250 - -
Vivi3g02578 281 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 233 IPR029021 -
Vivi3g02578 281 CDD DSP_laforin-like 90 237 IPR045204 GO:0019203
Vivi3g02578 281 ProSiteProfiles Dual specificity protein phosphatase domain profile. 91 248 IPR020422 GO:0006470|GO:0008138
Vivi3g02578 281 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 74 281 - -
Vivi3g02578 281 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 168 227 IPR000387 GO:0016311|GO:0016791
Vivi3g02578 281 SMART dsp_5 91 233 IPR020422 GO:0006470|GO:0008138
Vivi3g02578 281 Pfam Dual specificity phosphatase, catalytic domain 112 231 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02578 Vivi-Chr3 43528558 43530530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02578 29 281 Protein tyrosine phosphatase (PTP) family AT3G10940 74.118 1.43e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02578 - - gmx:100805592 463.381