Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02569 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGAAAGAAGATCAAAAGGGAAGGAGATCATCATCATCATCATCATGTTTCAAATTCTTCACCTCAGATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACCCCTTGTGCAGCATGTAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTTTCTCCATATTTCTCCCCTCATGAGCCTCAGAAATTTGCTTCTGTTCACAAAGTTTTTGGTGCCAGCAATGTCTCCAAGATGCTAATGGAGGTAGCAGAATGCTCTAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCATTGCAACAACAGGTTCAATCTTTACAAAGTGAACTCAATGTATTAAGAGGTGAAATACTTAAATACAAATTAAGAGAAGCAGCTAACATCAACATGAACACTATGAACAATATGAATATGAACATGAACATGCTACCAGCTTCTTCTCATCATGTTCCAATGCTCCCTTCTAATTCTGTTGCTGTTTCAATCGCTGCTCCACCGCCGCCGCCGCCTCCTCCTCCTCTTCCTCCTTCAAGTTCCAATTCCTCTTCTTCCATATACTATCAGAGGGATCCAAACAACTATACCAGAATTTCAAGTGATGATAATATTTCTTATTTTGGTTAA 726 0.3967 MSRERERFDEIGKKIKREGDHHHHHHVSNSSPQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQSELNVLRGEILKYKLREAANINMNTMNNMNMNMNMLPASSHHVPMLPSNSVAVSIAAPPPPPPPPPLPPSSSNSSSSIYYQRDPNNYTRISSDDNISYFG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02569 241 MobiDBLite consensus disorder prediction 195 212 - -
Vivi3g02569 241 Coils Coil 130 157 - -
Vivi3g02569 241 MobiDBLite consensus disorder prediction 213 241 - -
Vivi3g02569 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 182 - -
Vivi3g02569 241 MobiDBLite consensus disorder prediction 14 39 - -
Vivi3g02569 241 ProSiteProfiles LOB domain profile. 50 151 IPR004883 -
Vivi3g02569 241 MobiDBLite consensus disorder prediction 195 241 - -
Vivi3g02569 241 Pfam Lateral organ boundaries (LOB) domain 51 147 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02569 Vivi-Chr3 43267033 43268260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02569 5 171 AS2 family AT2G30340 64.286 2.19e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g02569 LOB 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02569 - - vvo:131640468 385.571