Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02566 ATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCTTTTGGTGTTGATGCATCATTCAGCTATAAGTATAACCAACAACGAAGGGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCGCTACAACCCATGTGATTCCGTTTGTTGACGGGGAGCCAATTTATAAAGGAAGCTGTCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATTTAGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCGCCGGACTATGTTTCTGAAGCTCGATTGTTTCAGAAAGGAGCAAAGGAGGCTGAAGAAAAAACCAAAATGTGGCAGCTCCCTTGGGTGCCACCACCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGGTTGCGGGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAACGAATTACGTGGTTTGGAATTTCTTTTGAATCAACTTGGACATGTTCAAGAGAGTGATGTACCATCATTCTTAGCAGAGACTGGCTACGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAATAAAAATATGCAATCCTTACGGAAAGCAAAAGGTGAACAAAAGAGCGAACAAGATGAATTTGAAAAAACTGACCCTAATGAGAAGTATACTCTTATAAACGTCCCTGATGACATGCTGACCGCAGATCAGCTTTTGGAAAAGAGGAAACAGTTGTCAATCAAATCTATGTCTGATGGGAGGCAGCGATTAAAACTGAAGCGCCAAGAGGAGGAGCTGGAAAGAGGAAGGAAACAACAGCTAGAGGAGGAGAGACGCCTGGCAAATCCAGAGCTTTACGTGGAACAATTGCGTGCCAGTTACAACGACCTTTCAGAGAAACTTAATCAACGTAAACGGCTCAAGACAAATGGAGGTTCCTCCACAAATGGAAATGGTTTGGCAGGTAGTGTTGGCCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTGCTGACAACTGCTGCCTTTGATCGTGGAAAAGGCGAGGATACATTTGGTGCCAAAGACGAAGATTGGCAACTTTACAAGTTGATGAGCAAAGATAATGACGACGACGATGAGGAACCAGATGAGGATAGCGTAGAGCTAGCCCGCATCTCTTCGAGGCTCCAGGAGTTGGATCCAACATTTGCGCCCAAGGTAGAAACAAGTAGCTCCCAACCTGCCGAGGTGCCACGTGTCCGTCCACTCACAAAAGAAGATTTTCAGATTGTTTTCGGAATCGAAAGGTTCAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAAGTCGGATTAGATGAGATGGCTGGGGTCTCAATGAGAAGGTTATCATGTAAGGACGAAAGACTTGAAGAGAGAATGACTAATTCCATACTTGTGACAGGCGGAAGTTCTCTTTTCCCCGGCATCGTTGAGCGCCTTGAAGCTGGAATTCGGATGATCAGACCCTGTGGTTCGCCTATAAAAATAATTAGAGCACTTGATCCGGTTATGGATGCATGGCGAGGTGCATCTGCTTATGCATCAACCCCAGGTTTCCGCACACAAACATTCACTAGGAAGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTTAAATATTCATTGTGA 1764 0.4376 MAELLFETYGVPSIAFGVDASFSYKYNQQRRVCDKDGLAMCPGFATTHVIPFVDGEPIYKGSCRTNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYVAPDYVSEARLFQKGAKEAEEKTKMWQLPWVPPPVEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELRGLEFLLNQLGHVQESDVPSFLAETGYVSRQEVESARNKNMQSLRKAKGEQKSEQDEFEKTDPNEKYTLINVPDDMLTADQLLEKRKQLSIKSMSDGRQRLKLKRQEEELERGRKQQLEEERRLANPELYVEQLRASYNDLSEKLNQRKRLKTNGGSSTNGNGLAGSVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEEPDEDSVELARISSRLQELDPTFAPKVETSSSQPAEVPRVRPLTKEDFQIVFGIERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDERLEERMTNSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIIRALDPVMDAWRGASAYASTPGFRTQTFTRKDYYEKGEDWLRNYQLKYSL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02566 587 MobiDBLite consensus disorder prediction 272 302 - -
Vivi3g02566 587 Gene3D Actin; Chain A, domain 4 382 476 - -
Vivi3g02566 587 Gene3D Actin; Chain A, domain 4 67 129 - -
Vivi3g02566 587 FunFam ARP5 actin-related protein 5 homolog 477 546 - -
Vivi3g02566 587 Pfam Actin 1 134 IPR004000 -
Vivi3g02566 587 Pfam Actin 452 579 IPR004000 -
Vivi3g02566 587 Coils Coil 175 195 - -
Vivi3g02566 587 FunFam Putative actin-related protein 5 547 575 - -
Vivi3g02566 587 PANTHER ACTIN 1 575 IPR004000 -
Vivi3g02566 587 MobiDBLite consensus disorder prediction 333 347 - -
Vivi3g02566 587 MobiDBLite consensus disorder prediction 331 351 - -
Vivi3g02566 587 FunFam actin-related protein 5 18 72 - -
Vivi3g02566 587 FunFam Actin-related protein 5 69 123 - -
Vivi3g02566 587 SUPERFAMILY Actin-like ATPase domain 36 580 IPR043129 -
Vivi3g02566 587 Gene3D - 20 66 - -
Vivi3g02566 587 Gene3D - 477 546 - -
Vivi3g02566 587 Coils Coil 282 305 - -
Vivi3g02566 587 MobiDBLite consensus disorder prediction 215 246 - -
Vivi3g02566 587 Coils Coil 313 333 - -
Vivi3g02566 587 SMART actin_3 28 584 IPR004000 -
Vivi3g02566 587 MobiDBLite consensus disorder prediction 221 246 - -
Vivi3g02566 587 Gene3D - 1 19 - -
Vivi3g02566 587 Gene3D - 547 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02566 Vivi-Chr3 43172912 43178361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02566 453 574 Cytoskeleton Gene Families AT5G09810 33.607 2.41e-16 79.3