Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02544 ATGGCACCAGCACAGAAAGCCGCAAGAACACCCAGAGTCACCCGAAACCCCGAATTAATCAGGGGTATCGGAAAATACTCCAGGTCCACGATGTACCACAAGAGGGGACTCTGGGCCATCAAGGCTAAGCACGGCGGCGCTTTCCCCCGCCACGATCCAGCCCCTAAGCCTGAAGCTCCAGTCGTGAAGGCGCCCAAATTTTACCCGGCTGATGATGTTAAGAAGCCACTCCGCAACAAACACAAACCAAAACCCACCAAGCTCAGGGCTAGCATTACTCCAGGAACAGTTTTGATTCTTCTTGCCGGAAGATTCAAGGGAAAGAGAGTAGTCTTCCTCAAGCAGCTTCCTTCTGGACTTCTCCTCGTTACTGGTCCATTCAAGATTAACGGTGTCCCCTTGAGGCGTGTCAACCAATCATATGTTATTGGCACATCAACCAAAGTAGATGTTTCATCAGTTAACGTTGACAAGTTTGATGACAAATACTTCTCAAAGGAATCCCAAAAGAAGACAAAGAAAGGAGAGGGTGAATTCTTTGAGGCAGATAAGGAGGATAAAAAAGTGCTCCCCCAGTCAAAGAAAGACGATCAAAAGACTCTTGATGCTGGTTTGTTAAAAGCCATCGAAAGTGTTCCTGACTTAAAGACTTACCTTGGTGCCAGGTTTTCGTTGAAGGCAGGCGTGAAGCCTCATGAGTTAGTGTTCTAG 711 0.4754 MAPAQKAARTPRVTRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGAFPRHDPAPKPEAPVVKAPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSSVNVDKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQSKKDDQKTLDAGLLKAIESVPDLKTYLGARFSLKAGVKPHELVF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02544 236 Pfam Ribosomal protein L6, N-terminal domain 7 63 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vivi3g02544 236 SUPERFAMILY Translation proteins SH3-like domain 90 179 IPR008991 -
Vivi3g02544 236 FunFam 60S ribosomal protein L6 90 174 - -
Vivi3g02544 236 PANTHER 60S RIBOSOMAL PROTEIN L6 9 236 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vivi3g02544 236 Gene3D - 90 174 IPR014722 -
Vivi3g02544 236 CDD KOW_RPL6 84 236 IPR041997 -
Vivi3g02544 236 Pfam Ribosomal protein L6e 129 236 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02544 Vivi-Chr3 42918963 42920561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02544 9 236 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 79.825 6.39e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02544 K02934 - gmx:100499766 394.045