Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02541 ATGGAATTAGCCTCCAAGCTTCATCATCTCGACCTCACCGGAGCATTTATCTTCGATTCCCGACGCTTACCACGCACCCTAACTCACACTCATCTCACCTCTAAGCCCAACACCATCAACACCAACACTAATTTAGTTTATCCCAATCGATTCTTCCCCTCCAAAAAACCTAATTACACTTCACGTTTATCCGCCGTAGCCGCTGTCGACGATACTCCAGTAGCGGAGGATGATATCGAGTCTCTATTTTCCGAACCTGCGGTTAATGAACGACGCGGAAATAAGCAATCAAGTAGCGGTGCTTCAACCGTTTCATCCGGTGTGAAACTAGAAAACATCAGGAAAACCTATAAGGGGGTTACGGTGTTGAAGGAAGTTAATTGGGAGGTGAAAAAGGGAGAGAAGGTTGGTTTGGTTGGTGTTAACGGTGCGGGGAAGACGACGCAGATGAGGATTATTGCTGGTCTTGAAGAACCGGATTCGGGGAATGTGATAAAGGCGAAACCGAATATGAAAATTGCGTTTTTGAGTCAGGAGTTTGAGGTGTCGCAGAGTAGGACTGTGAGGGAGGAGTTTATGAGTGCTTTTAAAGAGGAAATGGAGGTTGCTACTAAGTTGGAGAAAGTGCAGAAGGCGCTTGAGGGGTCTGTTAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCACAGTCTGTGAATTTGGATGTTGTTGATTCGAAGGTAAGTAAGTTGATGCCTGAGCTTGGTTTTGGTGCAGAGGATTCTGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAAATGAGGATGTGTCTAGGCAAGATTTTACTTCAGGAACCAGATTTATTATTGTTAGATGAGCCTACAAATCACCTTGATCTTGATACCATTGAGTGGCTTGAAGAATATCTTAACATGCAGGATGTGCCAATGGTTATCATTTCCCACGACAGGGCTTTTCTCGATCAACTATGTACTAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATACTTTCAAAGGCAACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAAAAAGAAATTGAACAGACAAGAGAGTTGATAAGTAGGTTAGGTGCAGGAGCAAGTTCTGGCCGTGCTTCTACCGCTGAGAAGAAATTGGAAAAACTTCTGGGAGAGGAACTAGTAGAGAAGCCCTTTGAACGGAAACAAATGAGAATCAGGTTCCCAGTTCGTGGAAGCAGTGGAAGATCTGTTGTATCAGTCAGGAACTTGGATTTTGGCTTTGAGGATAAAATACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCTATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGCTTAGAGAAGCCAATCAGCGGTGAAGTTATACTTGGGGAGCATAATGTATTACCCAACTATTTTGAGCAAAATCAGGCTGAAGCACTTGATCTGGAAAAGACAGTGCTTGAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGAGTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGTAAAGTTTCTCTATTGAGTGGTGGCGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTCCTTGTTTTGGATGAACCTACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAACGAGTACGAGGGAACTATTATCACCGTATCTCATGATCGGTATTTTATTAAGCAGATAGTTAATAGAGTGATTGAAGTTAAAGATGGCAATTTACAGGATTATGCTGGAGATTACAATTATTATTTGGAGAAGAATCTTGATGCTAGGGAAAGAGAGCTTGAACGCCAGGCAGAGCTTGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTCCAGGCAGCAAAACAGAAGTCTAAAGGTGCAAAAAATTCAAAGAGATGGAATTGA 2109 0.4229 MELASKLHHLDLTGAFIFDSRRLPRTLTHTHLTSKPNTINTNTNLVYPNRFFPSKKPNYTSRLSAVAAVDDTPVAEDDIESLFSEPAVNERRGNKQSSSGASTVSSGVKLENIRKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVATKLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQSVNLDVVDSKVSKLMPELGFGAEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNMQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAEKKLEKLLGEELVEKPFERKQMRIRFPVRGSSGRSVVSVRNLDFGFEDKILFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTIITVSHDRYFIKQIVNRVIEVKDGNLQDYAGDYNYYLEKNLDARERELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGAKNSKRWN 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02541 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 435 650 IPR003439 GO:0005524
Vivi3g02541 702 Pfam ABC transporter 451 582 IPR003439 GO:0005524
Vivi3g02541 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 108 366 IPR003439 GO:0005524
Vivi3g02541 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 640 IPR027417 -
Vivi3g02541 702 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Vivi3g02541 702 FunFam ABC transporter ATP-binding protein 395 662 - -
Vivi3g02541 702 Coils Coil 646 691 - -
Vivi3g02541 702 CDD ABCF_EF-3 435 626 - -
Vivi3g02541 702 CDD ABCF_EF-3 108 338 - -
Vivi3g02541 702 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 107 694 - -
Vivi3g02541 702 ProSitePatterns ABC transporters family signature. 270 284 IPR017871 GO:0005524|GO:0016887
Vivi3g02541 702 MobiDBLite consensus disorder prediction 85 105 - -
Vivi3g02541 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 343 IPR027417 -
Vivi3g02541 702 MobiDBLite consensus disorder prediction 652 682 - -
Vivi3g02541 702 Pfam ABC transporter 123 298 IPR003439 GO:0005524
Vivi3g02541 702 Gene3D - 398 693 IPR027417 -
Vivi3g02541 702 MobiDBLite consensus disorder prediction 652 702 - -
Vivi3g02541 702 MobiDBLite consensus disorder prediction 90 105 - -
Vivi3g02541 702 Gene3D - 105 389 IPR027417 -
Vivi3g02541 702 SMART AAA_5 132 347 IPR003593 GO:0016887
Vivi3g02541 702 SMART AAA_5 459 627 IPR003593 GO:0016887
Vivi3g02541 702 Pfam ABC transporter 337 424 IPR032781 -
Vivi3g02541 702 FunFam Putative ABC transporter ATP-binding component 109 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02541 Vivi-Chr3 42852928 42858941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02541 432 652 Calmodulin-binding Proteins AT2G36910 25.911 7.38e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02541 - - gmx:100796907 1039.64