Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02539 ATGGACGTTTATTTTGGAAACCCTAACCCATTTTCTGAAGTTGATAATAACATACCTCCTCCTGTTTCCTCTGATTTCATTAACTTATCTGATTATCTTGTCCTTGACGATGATTTTGTTGCTAATCAAGACTCTAATTGGTCACAAAGTACAGAAACTCCTGAATCATCGGATAAAGCAGGCTCCATCAATGATATTAATGTCATTAATCAAGGATTTAGTGATGAGATTGAAACCTCTATCAACAACAACAACAACAGTAACATGATCATAAAACGCAAAAATAGAGGGATTAGTGAAAGTAGTACAGTAGAAGTGAGTCGAAGGGTTACGTTTAGAACGAGATCGCAGTTTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGAAAGAAGTTTGTCAAAAATAACTCCAACCCAAGGAACTACTATAAGTGTTCAGGTGAAGGGTGTGGTGTGAAGAAGAGGGTGGAAAGGGATAGGGAAGATACAAGCTATGTGTTAACAAGTTATGATGGTGTCCACAATCATGAGAGTCCGTGCACTTCGTACTACACTCCGCCGGCAATGTCTTTGGTGTATTCTAATGAATGGCAACTGCAGCAGCAGCCTTCTACGAACTCGTCATCTTCTAATTAA 642 0.3879 MDVYFGNPNPFSEVDNNIPPPVSSDFINLSDYLVLDDDFVANQDSNWSQSTETPESSDKAGSINDINVINQGFSDEIETSINNNNNSNMIIKRKNRGISESSTVEVSRRVTFRTRSQFEIMDDGYKWRKYGKKFVKNNSNPRNYYKCSGEGCGVKKRVERDREDTSYVLTSYDGVHNHESPCTSYYTPPAMSLVYSNEWQLQQQPSTNSSSSN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02539 213 SMART WRKY_cls 121 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g02539 213 ProSiteProfiles WRKY domain profile. 116 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g02539 213 Pfam WRKY DNA -binding domain 122 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g02539 213 Gene3D WRKY domain 108 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g02539 213 FunFam WRKY transcription factor 57 107 181 - -
Vivi3g02539 213 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 205 IPR044810 GO:0003700
Vivi3g02539 213 SUPERFAMILY WRKY DNA-binding domain 113 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02539 Vivi-Chr3 42828300 42830231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02539 95 197 WRKY Transcription Factor Family AT5G64810 62.500 4.38e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g02539 WRKY 3.5e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02539 - - mtr:11423676 249.98