Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02532 ATGAACATATTCTCTCTCCTTCCCTCTCTACACCCACTAAAAATGAAACCCCTCTACAGCACCAACACTCTCTTACTCCTCCTTGCTCTATTCCTTCTCCACTTAGGACCATCCCACTCTTCTTCTTCAACTTCAGCCTCTCAACTTCTCTACTTCAAACAATCTCTCCCTAACCCATCTCTCCTCCATGACTGGCTCCCTTCCAAAAACCCATGTTCCTTCACCGGCATCACCTGCAACCAAACCACCGTAACTTCCATAGACCTCACCTTCATCCCTCTCAACACAAATCTCACCGTCGTCGCCACCTACCTTCTCACCCTCGACCACCTTCAAACCCTCACCTTAAAATCCTCAAACATCACTTCCTCTCCCATTTCTCTCTCCCACACCAAGTGCACTCCCTCACTCACCTCCATAGATCTATCACAAAACACTATATCCTCATCTTTCTCCAGCTTATCTTTTCTCTCCTCATGCTCCGGTCTTAAATCTCTTAACCTCTCCAACAACCAGCTCGACTTTGATTCTCCGAAATGGAGTCTCAGTTCGTCTCTCCGGTTCCTCGACGTCTCCAACAACAAGATTTCCGGCCCTGGATTCTTCCCTTGGATCCTTAACCATGACTTAGAGTTTTTATCTCTCAGAGGAAACAAAGTCACCGGAGAAACCGACTTCTCCGGTTACAAAACTCTCAAGCATCTTGATATTTCCTCTAATAATTTCACTGTCTCTATACCTTCCTTCGGTGACTGTTCATCCCTCGAACACCTCGATATCTCTGCAAATAAATACTTCGGCGACATTACCAGAACTATCTCGCCGTGCAAAAACCTCGTCCATCTCAACCTCTCCGGCAACCAGTTCACCGGTCCAGTTCCTTCTCTTCCTTCTGGCTCCCTACAGTTTCTCTACCTTGCCGCAAATCACTTCGCCGGAAAAATTCCGGCGCGTCTGGCTGACCTCTGCTCAACTCTCATCGAACTCGATCTCTCCTCCAACAACCTCACCGGTCCAGTCCCACGCGAGTTCGGCGCGTGCACTTTGTTGAAGTCGTTTGACATATCGAGCAACAAATTCTCCGGCGAGCTTCCGATGGAGGTTTTAACTGAGATTAGTGGCTTGAAAGAACTGGCGGTGGCGTTTAACGAATTTTCTGGTCCACTTCCCGAGTCGCTGTCGAAGCTAACGGGTTTAGAATCGTTAGATCTGAGTTCGAATAACTTCAGCGGAACGATTCCGAAGTGGCTTTGCGGAGAAGAATTAGGGAATAATTTGAAGGGACTTTACCTACAAAATAACGTTTTCACGGGTTCTATTCCTTCAACGCTGAGTAACTGTTCTAACCTCGTTGCTCTTGATTTGAGTTTCAATTACCTCACGGGAACCATTCCTCCGAGTTTAGGTTCGCTTTCGAAGCTTCGCGATTTAATCATGTGGTTGAATCAGCTTCATGGCGAAATTCCTCAAGAGCTTCGAGATATGTCCAGTCTCGAGAATTTGATTCTTGATTTTAATGAGTTGAGTGGAACCATTCCGTCGGGGCTTGTGAATTGCACCAAGCTGAATTGGATCTCGCTGTCGAATAATAGGCTTAGCGGGGAGATTCCTCCGTGGATTGGAAAGCTTTCGAATCTTGCTATTTTGAAATTGAGTAATAACTCGTTCTCCGGGAGGATTCCGCCGGAGTTGGGTGATTGCCCTAGCTTGATATGGTTGGATCTGAATACAAATTTTCTTACGGGACCGATACCTCCAGAGTTGGCTAAGCAATCGGGGAAAATTGTGGTTAATTTCATCAGTGGGAAGACGTATGTTTACATTAAGAATGATGGGAGTAAAGAGTGTCATGGAGCTGGGAGCTTGCTGGAATTTGCAGGGATTAATCAGGGACAATTGGGGAGAATTTCAACAAGGAACCCTTGTAATTTCACTAGGGTTTATGGAGGTAAGCTTCAGCCTACGTTTACGCTTAACGGCTCGATGATCTTTTTGGATGTTTCACACAACATGTTGTCTGGTACCATTCCTAAGGAACTTGGTGAAATGGTATATCTCTATGTTTTGCATTTGAGTCATAATAACCTATCTGGTAGCATTCCTCAAGAGCTTGGTAGGATGAAGAATCTCAATATTCTTGATCTTTCTTACAATAAGTTACAAGATCAAATTCCACAGGCCTTAGCAAGGCTTTCATTGCTCACTGAGATTGACTTCTCCAACAATTTTCTCTCTGGATTGATTCCGGAATCTGGTCAATTTGACACGTTCCCAGTTAGTAAGTTCCAGAACAACTCCGGTCTTTGCGGTGTTCCTCTTCCACCGTGTGGGGCGGACTCGGGAGGGGGTGCGGGTTCGCAGCATAAGTCTCATAGGAGACAGGCTTCTCTTGCAGGGAGTGTGGCAATGGGATTGCTTTTCTCTCTTTTCTGTGTTTTCGGTTTGATCATTATTGCTATCGAGACAAGAAAGAGGAGGAAGAAAAAGGAGGCAGCTATTGATGGTTACATTGACAATTCTCATTCTGGCAATGGCAATAATTCTGGCTGGAAATTTACCACTGCCCGCGAAGCTCTCAGCATTAACCTCGCAGCGTTTGACAAGCCACTTCGAAAGCTCACTTTCGCAGATCTTCTAGCAGCAACCAATGGTTTTCACAATGACAGTCTCATTGGTTCAGGTGGTTTCGGTGATGTGTATAAAGCTCAGTTGAAAGACGGAAGTGTCGTGGCCATCAAGAAACTGATACATGTAAGTGGACAAGGGGACAGAGAATTCACAGCTGAAATGGAAACCATTGGGAAAATCAAGCACAGAAACCTTGTTCCTCTACTGGGATATTGCAAAGTTGGAGAGGAAAGACTGTTGGTTTACGAGTACATGAAATATGGAAGTCTAGACGAAGTCCTGCACGACCCGAAGAAAGCTGGGATCAAGATGAATTGGTCAGTGAGAAGGAAGATTGCAATTGGAGCTGCAAGAGGGTTGGCTTTTCTTCACCACAACTGTATCCCACATATCATTCACAGAGACATGAAATCAAGCAATGTCTTGATTGATGAAAATTTGGAAGCCAGGGTCTCTGATTTTGGTATGGCTAGGCTTATGAGTGCTATGGACACACATTTGAGTGTAAGCACATTGGCGGGTACACCGGGCTATGTCCCTCCAGAATACTATCAAAGCTTTAGATGCTCCACTAAAGGCGACGTTTATAGTTATGGTGTAGTTTTGCTGGAGTTGCTGACGGGGAAAAGACCAACCGATTCAGATGAGTTTGGCGATAACAATCTTGTCGGATGGGTTAAACAACACGCCAAACTTAAAATAAGTGATGTCTTTGATAAAGAGCTCATGAAAGAAGATCCCAATTTAGAGATCGAGCTTTTGCAGCACTTAAAGGTAGCTTGTGCTTGTTTGGATGACAGACCTTGGAGGAGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATACAAGCAGGTTCAGGAATGGATTCTCAGTCTACTATAGCCACCGAAGACGAAGGTTTCAACGCCATCGAAATGGTTGAAATGAGCATAAAAGAAGTCCCTGAATCAATCAAGCATTAA 3597 0.4493 MNIFSLLPSLHPLKMKPLYSTNTLLLLLALFLLHLGPSHSSSSTSASQLLYFKQSLPNPSLLHDWLPSKNPCSFTGITCNQTTVTSIDLTFIPLNTNLTVVATYLLTLDHLQTLTLKSSNITSSPISLSHTKCTPSLTSIDLSQNTISSSFSSLSFLSSCSGLKSLNLSNNQLDFDSPKWSLSSSLRFLDVSNNKISGPGFFPWILNHDLEFLSLRGNKVTGETDFSGYKTLKHLDISSNNFTVSIPSFGDCSSLEHLDISANKYFGDITRTISPCKNLVHLNLSGNQFTGPVPSLPSGSLQFLYLAANHFAGKIPARLADLCSTLIELDLSSNNLTGPVPREFGACTLLKSFDISSNKFSGELPMEVLTEISGLKELAVAFNEFSGPLPESLSKLTGLESLDLSSNNFSGTIPKWLCGEELGNNLKGLYLQNNVFTGSIPSTLSNCSNLVALDLSFNYLTGTIPPSLGSLSKLRDLIMWLNQLHGEIPQELRDMSSLENLILDFNELSGTIPSGLVNCTKLNWISLSNNRLSGEIPPWIGKLSNLAILKLSNNSFSGRIPPELGDCPSLIWLDLNTNFLTGPIPPELAKQSGKIVVNFISGKTYVYIKNDGSKECHGAGSLLEFAGINQGQLGRISTRNPCNFTRVYGGKLQPTFTLNGSMIFLDVSHNMLSGTIPKELGEMVYLYVLHLSHNNLSGSIPQELGRMKNLNILDLSYNKLQDQIPQALARLSLLTEIDFSNNFLSGLIPESGQFDTFPVSKFQNNSGLCGVPLPPCGADSGGGAGSQHKSHRRQASLAGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAAIDGYIDNSHSGNGNNSGWKFTTAREALSINLAAFDKPLRKLTFADLLAATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLDEVLHDPKKAGIKMNWSVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLIDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSDEFGDNNLVGWVKQHAKLKISDVFDKELMKEDPNLEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGMDSQSTIATEDEGFNAIEMVEMSIKEVPESIKH 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02532 1198 SUPERFAMILY RNI-like 300 586 - -
Vivi3g02532 1198 Gene3D Ribonuclease Inhibitor 49 776 IPR032675 -
Vivi3g02532 1198 FunFam serine/threonine-protein kinase BRI1-like 2 846 960 - -
Vivi3g02532 1198 ProSiteProfiles Leucine-rich repeat profile. 136 158 IPR001611 GO:0005515
Vivi3g02532 1198 Pfam Protein kinase domain 885 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02532 1198 SUPERFAMILY L domain-like 656 775 - -
Vivi3g02532 1198 Gene3D Phosphorylase Kinase; domain 1 847 960 - -
Vivi3g02532 1198 Gene3D Transferase(Phosphotransferase) domain 1 961 1162 - -
Vivi3g02532 1198 FunFam Brassinosteroid LRR receptor kinase 961 1162 - -
Vivi3g02532 1198 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 95 295 - -
Vivi3g02532 1198 Pfam Leucine rich repeat 231 289 IPR001611 GO:0005515
Vivi3g02532 1198 Pfam Leucine rich repeat 686 742 IPR001611 GO:0005515
Vivi3g02532 1198 FunFam Serine/threonine-protein kinase BRI1-like 1 600 657 - -
Vivi3g02532 1198 Gene3D - 598 658 - -
Vivi3g02532 1198 CDD STKc_IRAK 891 1160 - -
Vivi3g02532 1198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1007 1019 IPR008271 GO:0004672|GO:0006468
Vivi3g02532 1198 FunFam Brassinosteroid LRR receptor kinase 135 609 - -
Vivi3g02532 1198 SMART serkin_6 885 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02532 1198 ProSiteProfiles Protein kinase domain profile. 885 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02532 1198 SMART LRR_typ_2 543 567 IPR003591 -
Vivi3g02532 1198 SMART LRR_typ_2 396 420 IPR003591 -
Vivi3g02532 1198 SMART LRR_typ_2 108 131 IPR003591 -
Vivi3g02532 1198 SMART LRR_typ_2 707 730 IPR003591 -
Vivi3g02532 1198 SMART LRR_typ_2 731 754 IPR003591 -
Vivi3g02532 1198 SMART LRR_typ_2 276 303 IPR003591 -
Vivi3g02532 1198 SMART LRR_typ_2 495 519 IPR003591 -
Vivi3g02532 1198 SUPERFAMILY L domain-like 60 371 - -
Vivi3g02532 1198 ProSitePatterns Protein kinases ATP-binding region signature. 891 914 IPR017441 GO:0005524
Vivi3g02532 1198 SUPERFAMILY Protein kinase-like (PK-like) 871 1163 IPR011009 -
Vivi3g02532 1198 Pfam Leucine Rich repeat 183 200 IPR001611 GO:0005515
Vivi3g02532 1198 Pfam Leucine Rich repeat 323 338 IPR001611 GO:0005515
Vivi3g02532 1198 Pfam Brassinosteroid receptor island domain 593 657 IPR045381 -
Vivi3g02532 1198 Pfam Leucine rich repeat N-terminal domain 46 80 IPR013210 -
Vivi3g02532 1198 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 657 775 - -
Vivi3g02532 1198 PRINTS Leucine-rich repeat signature 707 720 - -
Vivi3g02532 1198 PRINTS Leucine-rich repeat signature 399 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02532 Vivi-Chr3 42660366 42664519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02532 48 1194 Receptor kinase-like Gene Family AT4G39400 68.820 0.0 1510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vivi3g02532 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02532 K13415 - gmx:100499629 1830.84