Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02523 ATGTGTTTGTTTAAGGTGGCGAATCCAAGAGATAATAAAGTTATTAAAAGGGAACTCAATGATCCCACATTGTCGTCAAGTGAAATGGTATTTCCTTTTCCTGGGATGAATAGAGATAGAGAAATGTCGGCTATGATCTCTGCTTTGACTCATATTGTTTCTGGAGATGTTCCAAATCAAAGCACTGCAGTTGAACTTGAACCAAATATCAAGATGTCTACTTCTACTAATTCTTCATCTAGTTATGGTACTAGTTCTTCTCTCAAAAGAACTAGAGAAGATGATAGATACCTCGGAGATCAATCGACACAGACACCAGACACAACACTCGTTCTACCAACAAATACAGAAAGTTCGAGAAATAGGACAGCGACAGCGACAACAAGAGTGACAAGAGAAATGGGAAATGCTGTGTATGAATATAGAAGAACAGAGAATGTGGTAAGAGAAGGAGAAGAGAAAAGAAAGTACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCGGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACCGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGAAACAAAGCAAAACTGAATTTTCCTGAGAATGTTACTCTTCGTCATCCTCCTCCAACAACGTCGAATCAATGGAATATTTCGAATATGCCGAGTTCGGTTGTTTCTATTACAACTTCTACGGACCCGGTTGTTCATACTCGACCTTTTCTTTCTTCTTCTTCTCAGCCTTCAACGAACTTTTATGATCCTTTTCAGTTTTCGGGTATTCTTGGTAGGAATGTTTATGATGATAATGTGGTTATGAGTTCTACTATGGCTTCTCATCTTCAATCTTCTTCGTCGGTGTTGTCACCAGCTTCTTCTTTGGCATCTTCCTCTTCTGCATTTCCTTCTTCTATGCAGACCAATGCTTCAGCTTCCTCGTATTATTCTACACAGTTTCCACCATGGTCTGCCTCGGATCATAACTCTTCTTCCTCTAGATGA 1041 0.4015 MCLFKVANPRDNKVIKRELNDPTLSSSEMVFPFPGMNRDREMSAMISALTHIVSGDVPNQSTAVELEPNIKMSTSTNSSSSYGTSSSLKRTREDDRYLGDQSTQTPDTTLVLPTNTESSRNRTATATTRVTREMGNAVYEYRRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPPTTSNQWNISNMPSSVVSITTSTDPVVHTRPFLSSSSQPSTNFYDPFQFSGILGRNVYDDNVVMSSTMASHLQSSSSVLSPASSLASSSSAFPSSMQTNASASSYYSTQFPPWSASDHNSSSSR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02523 346 Gene3D AP2/ERF domain 155 215 IPR036955 GO:0003700|GO:0006355
Vivi3g02523 346 PRINTS Ethylene responsive element binding protein signature 179 195 IPR001471 GO:0003700|GO:0006355
Vivi3g02523 346 PRINTS Ethylene responsive element binding protein signature 157 168 IPR001471 GO:0003700|GO:0006355
Vivi3g02523 346 Pfam AP2 domain 156 205 IPR001471 GO:0003700|GO:0006355
Vivi3g02523 346 FunFam Ethylene-responsive transcription factor 2 155 214 - -
Vivi3g02523 346 ProSiteProfiles AP2/ERF domain profile. 156 213 IPR001471 GO:0003700|GO:0006355
Vivi3g02523 346 PANTHER DNA-BINDING DOMAIN 91 311 IPR044808 GO:0003700|GO:0009873
Vivi3g02523 346 MobiDBLite consensus disorder prediction 101 126 - -
Vivi3g02523 346 MobiDBLite consensus disorder prediction 67 87 - -
Vivi3g02523 346 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Vivi3g02523 346 SMART rav1_2 156 219 IPR001471 GO:0003700|GO:0006355
Vivi3g02523 346 CDD AP2 156 215 IPR001471 GO:0003700|GO:0006355
Vivi3g02523 346 MobiDBLite consensus disorder prediction 67 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02523 Vivi-Chr3 42296224 42297985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02523 154 218 AP2-EREBP Transcription Factor Family AT5G61890 84.615 3.40e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g02523 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02523 - - vvo:131639362 594.734