Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02520 ATGGATTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAGGAGGAGCTAGAAGAGAAAGATTCTTCTAAGAAGGGGAGGGAGAGTAGCGACAGGACCGAACGGAGCTACAGAAAGCGCGATGAGATCGAAGAGGGCGCTGAATTGAAGAGGAGCAAGAGGTCCAGTGGCGACGACGATGAACATGTCTCCAGGAAGGATAGGGATCGGGATGATGACCGCGACAAGGAGCGTCGTAGGAGTGGCAGGGATAGGGATAGGGATAGAGACGGTGAGAGGAGTAGCAGAGACAGAGACCGAGGCCGAGACAGGGAGAAGGATGGGGATAGGGAGAAAGATAGGAGAGACAAGGATAGAGATAGGGAAAGGAGGGACAGGGAGAGGGAGAAGGAGAAGGAAAAGGAGAGAGAAAGGTCCCGGAGAAGCAAGAGTCGTTCCGAGCGGGAAAGAGAGATAGAACGGGAGGAAAGAGAGAGGTCTCGGAGAAGCGGAAGTCGTTCTGAACGAGATAGAGAGAAGGAACGGGAGGAGAGAGACAGGTCTCGGAGGAGCAGAAGTCGTTCTGAGCGTGATAGTGTTAGAGAACGGGATTTTGACATGAGAGATAGCCGGAGACTTAGGGAGAAGAAGGAAGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTACGATGCAATGTCGGTGCCGATGGCAATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCAAATACTACTACTGGGGCTGCTGGTGTGGTCGGACCATATGGAGCCGTGGACAGAAAACTGTATGTGGGGAACCTTCATTTCAATATGACTGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGATTTATTCAATTTGCCCACCTAGAGCATGCCAAAGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAGGCCAAGATACAACAGCAAAATCTGCAGATTTTGATGATGATGAAGGCGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGTTGGATCGCTCTGGAATCGCTGCAAGCATTGGCTTACCCATGAATGGTTCAGTTCCTGCCCAGCAGGCTATTAGTTTGCCTATTGGTAATCCTGGATTAATACCAGCACTAGCTCTACCAACTCAATTTATGCCTACCCAAGTGGCCGAACCTGTAGGAACCCCCAGCAACTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTCGACAAGAATAGTGCAGGTTTTGTATATTTGATGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAGCGTGCGATGCACATGCGGTGGTTTGCACGCAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCTAAGTTTAAAGGGGTTGTGTGA 1770 0.4723 MDFDEYDYLEKTVEEELEEKDSSKKGRESSDRTERSYRKRDEIEEGAELKRSKRSSGDDDEHVSRKDRDRDDDRDKERRRSGRDRDRDRDGERSSRDRDRGRDREKDGDREKDRRDKDRDRERRDREREKEKEKERERSRRSKSRSEREREIEREERERSRRSGSRSERDREKEREERDRSRRSRSRSERDSVRERDFDMRDSRRLREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGGQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPMNGSVPAQQAISLPIGNPGLIPALALPTQFMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGVV 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02520 589 Gene3D - 322 417 IPR012677 -
Vivi3g02520 589 SMART rrm1_1 496 573 IPR000504 GO:0003723
Vivi3g02520 589 SMART rrm1_1 225 297 IPR000504 GO:0003723
Vivi3g02520 589 SMART rrm1_1 327 400 IPR000504 GO:0003723
Vivi3g02520 589 NCBIfam splicing factor, CC1-like family 109 585 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi3g02520 589 FunFam Splicing factor CC1-like 154 309 - -
Vivi3g02520 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 301 IPR000504 GO:0003723
Vivi3g02520 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 404 IPR000504 GO:0003723
Vivi3g02520 589 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 149 585 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi3g02520 589 CDD RRM1_RBM39_like 225 297 - -
Vivi3g02520 589 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 419 513 IPR029123 -
Vivi3g02520 589 SUPERFAMILY RNA-binding domain, RBD 326 578 IPR035979 GO:0003676
Vivi3g02520 589 CDD RRM3_RBM39_like 494 576 - -
Vivi3g02520 589 Gene3D - 490 588 IPR012677 -
Vivi3g02520 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 569 IPR000504 GO:0003723
Vivi3g02520 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 398 IPR000504 GO:0003723
Vivi3g02520 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 293 IPR000504 GO:0003723
Vivi3g02520 589 FunFam Splicing factor, CC1-like protein 490 588 - -
Vivi3g02520 589 MobiDBLite consensus disorder prediction 13 222 - -
Vivi3g02520 589 FunFam Splicing factor CC1-like 310 415 - -
Vivi3g02520 589 MobiDBLite consensus disorder prediction 1 222 - -
Vivi3g02520 589 Coils Coil 117 149 - -
Vivi3g02520 589 Gene3D - 151 311 IPR012677 -
Vivi3g02520 589 SUPERFAMILY RNA-binding domain, RBD 217 304 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02520 Vivi-Chr3 42227239 42234483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02520 325 399 Eukaryotic Initiation Factors Gene Family AT4G34110 39.474 6.73e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02520 K13091 - gmx:100802446 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04377 5 141338013 141344350 Vivi3g02520 3 42227239 42234483 ECH
Vivi3g02520 3 42227239 42234483 Vivi3g02520 3 42227239 42234483 ECH
Vivi5g04377 5 141338013 141344350 Vivi3g02520 3 42227239 42234483 PCT