Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02512 ATGGATTTGGACGATTTCCGATCCATACTAGACACGGCGGGCGTTGACGTGTGGTTGTTCATCGACACCGCGATATCCGTCGCTTCTCTGGACAACGCCGGAGAGTTGAAGCAACGGAGAGACGGAATCGTCGAGCGTCTTTACGCCGCCACCACTGCTCCTCCGCTTTGTCAGAATTGTGAAGGCGGAGGGAGCCTTTTGACTGAGGGAAACCAAATCAGGAAACAGAGTAACCCTAGTTTAAGCCCTGAGCAAAATCAGCACCGTCGCGGCGGCTCGTCTCCTCCGACGCCGCAGTCGCAGGGGAACGATGATGAGGAAGATGAGGAGATAGATCCTTACGGCGGTTTGTTCGATGATGGACAGAGGAGGATTCTAGAAATTAAAGAGTTGCTTGAAGATCCGAGACAGACTGAAGATACTTTGTTGGAGTCACTGCAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAGACTGACATTGGGAGGAACGTGAATCAGTTAAGGAAACATCCATCCAGCGATGTTCGCAGTTTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGAATGGGTGAAGTTGAATCCAATAAGAGGAAAAAACACTGTCATGGCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCACCAAATCCACAGAATGGAAGCTCTGGTTCTGACCGTAACACTTCCGAACTAGAACCAAAACCTAAACAAAAACCGAATCTTCCACGCAAAGAACCACCTCCAAAACTAAGGCCATCACCCCCAGTTGCCGCTCCCCCTACTCAAAATAGACAGAGAGAACAAAGAGAGAGCAATTTTGATGCCGAGAGGCTTGCATCTGCAAGAAAACGGCTTCAAGAGAACTATAAAGAAGCTGAAAATGCCAAAAAGCAAAGAACTATTCAAGTGATGGACATACATGAGTTACCTAAGTCAAAATCAAAGAACACTTTCTTTGCAAAGAACAGAGGTGGTGGCAGTTCTCACGGAAGGCAGTGGTGA 1065 0.4676 MDLDDFRSILDTAGVDVWLFIDTAISVASLDNAGELKQRRDGIVERLYAATTAPPLCQNCEGGGSLLTEGNQIRKQSNPSLSPEQNQHRRGGSSPPTPQSQGNDDEEDEEIDPYGGLFDDGQRRILEIKELLEDPRQTEDTLLESLQNLVDIDITFQELKETDIGRNVNQLRKHPSSDVRSLVKLLVKKWKEIVDEWVKLNPIRGKNTVMADGDSPLQKTTPNGHHHQIPDFAYSPNPQNGSSGSDRNTSELEPKPKQKPNLPRKEPPPKLRPSPPVAAPPTQNRQREQRESNFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKSKNTFFAKNRGGGSSHGRQW 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02512 354 MobiDBLite consensus disorder prediction 250 266 - -
Vivi3g02512 354 MobiDBLite consensus disorder prediction 288 335 - -
Vivi3g02512 354 MobiDBLite consensus disorder prediction 68 118 - -
Vivi3g02512 354 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 119 205 IPR035441 -
Vivi3g02512 354 MobiDBLite consensus disorder prediction 68 101 - -
Vivi3g02512 354 MobiDBLite consensus disorder prediction 233 249 - -
Vivi3g02512 354 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 352 IPR044790 -
Vivi3g02512 354 ProSiteProfiles TFIIS N-terminal domain profile. 126 197 IPR017923 -
Vivi3g02512 354 Pfam TFIIS helical bundle-like domain 146 194 IPR017923 -
Vivi3g02512 354 MobiDBLite consensus disorder prediction 336 354 - -
Vivi3g02512 354 MobiDBLite consensus disorder prediction 206 354 - -
Vivi3g02512 354 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 124 202 IPR035441 -
Vivi3g02512 354 CDD TFIIS_I 124 195 - -
Vivi3g02512 354 SMART TFS2_5 125 196 IPR003617 GO:0005634
Vivi3g02512 354 Coils Coil 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02512 Vivi-Chr3 42079656 42082505 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi3g02512 Med26 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02512 - - aip:107622503 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02512 3 42079656 42082505 Vivi3g02512 3 42079656 42082505 ECH