Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02510 ATGAACCATCTCCTCCGAAAAAATCTTCTATTTTTCACCTCTTCACGTCCCTCATCACAATCTCGCACTCTTCTTGTTCGGTTTCATCTTTGCGAGTTCTCATCTTCTCACACTCCGTATTCCCACTGGAAGCGCCACGACGAAGAGTCACGCAATGTTAGGGTTTCAGTATGGTGGGATTTCGAGAACTGCAACGTGCCTGCCGGTGTTAACGTTTCCAAAGTAGCACCTGCTATCACTGACGCCGTTAGAGCTAACGGGATTAAAGGTCCTGTTCATATTACCGCTTTCGGCGATGTTTATCAGATTTCAAGACCCAATCAGGAGGCACTTGCTTTCACTGGGATTCATCTTAATCACATTCCCAATGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTGTTGATCTTATGTATTGGGTTTCCCAAAATCCTCCGCCTGCACATCTCTTTCTGATATCTGGTGATAGAGACTTTGCTGGCATGTTGCACCGGTTAAGAATGAATAACTATAATATCTTGCTAGCAAGTCCTGGAAAGGCTCCTGATGTTCTCCGCAGTGCAGCAACTATAATGTGGCAGTGGCCATCTTTGCTCAAGGGAGAAGATCTAACTGGAAAACATTTCAACCACCCTCCCGATGGTCAGTTTGGTTCTTGGTACGGAAACTCTAAAGTGCCTCTTGAGAACCCCTTTTCAGCTACTGAGCAGTCAACATCTTCACAGAATGTACATGTTACGGAAATCAATGAACCCTCCTCAGACTTAAAGGTAGGTGGAGAAGTTCCAAAATCAGTTATAAGGAAGATTAAGAATATATTGAGTTTACATCCAAAAGGCATCAGCATTTCAGAACTTCGTGCTGAGCTGACAAAACGTGACGTGTCTTTGGGTAAAGGCATATTTGGATATAAAAGGCTCTCCCGCTTTCTATCATCAATACCACATGTACAACTCCGGCATTTTAGAGATGGTAATTATTGTGTGTATTTGATCCCCTCAGCATACCATGAACCTTCTGAAAGCAGCACTGCTTTATCAACGGTATCTGCAGTTAAGAATGAGGAGATGAGCTGTACAACAACTCCAAAGCTACACAGTGAAGATAAAGACATAAATAGAGACTTGCATGAGACTCTCTCAGTGTCTTCATCGGATGAAAGGATCTTTGAGGATGATTCAAAATCATTCCAATCTACCCCTTTACAAGGAATACCTATCGAGGAAGACGTGTCGCGTAAATCATACGGCTATGCAACAACTCCAATGCTACACAGTGAGGATAAGGACATGGATAGAGATACACATAGGACTCCCTCGGTGTCTTCAGTGCATGAAAGGATCATTGAAGATGGTTTAAAATCACTCCACTCTACCCCTTCACAAGGAAAACCTATTGAAGATGTGTCACAAAAATCATCTGTAGGCAGTGAGAAGGTTCTGGATGTGTCTAATGCACAATTGTTAGAGAATCAGCTTTCGTCAAAGGACAATGATGTTTACAAAACTGAAATTGGTTCCTTTAAAGTGAGATCTATAAAGTTTTCTGATGATGAAATTGTTAGGTCTGAGAATGTAAGTCCAAAAGTTCTTGAAAAATATACCACTTCAGGGAATTCCTCAATGATGGAAAACAATGATGTAGTAAATTGTGAATCTGGAAAATCTATAGCAAAGAACAAACACGAGGATCAACCTAGAAAGGAGGTTGATGGTCACAGCCCATATTCTTCAGCAGTTGACGACTCTCTGGTTGACGAAAGACCCGATGTTCATCCTGAAACTTACAGCAAAAGATCAACTTTCCTTAGCTGGATTAAAAGTTGGTGGCCATTTCAGAAAAGCAATGTAAAGGCTGATGCTTTTACTGCTTATCAGAACAATGTGACTAGTAATTTTGAAGATTCCAAGTTATCCGAACTGGACCATACTGCTAGTAATCTTGAAACACCTAAGCCATTAGAACCACACCAGGATGTCAGTCATTCTGGAAAGCCTGTGTTATTTTCTAGTGATTCCTTTTGGAATGACTTGGAATCTTTTGTTTTCACCCCCAAAGGATCACTTCTTATTTCCCAGTCTAGAAGCAGGGAGGTTTTGGCTCATAAATTACAAAAGTATGGACCCATGGTTCTTAAATCTTCTGATGAAAACGATATCATTCAATTGGTGGAACTGTTGATAGCAGAAAAAAAATGGTTGGAGGAGAGCCCCTCACATGCATTCCCTTTTAGGGTAACTCAATCAGTTCGGAAGAGCACGCCGATGGGGCTGTCTAATGGTACAAGTGGTTTGAGATCTCTGTTTCTAAGTAAAACATCACAGTCCAACTCGCAGAAGTCATTTGAAAATGAAGGGGAGAAACACTCTCACAGTACTCAGCAAACGGGAGTTTCCAGACCTGCCACTGAAACAAAATATACTGAGAAGTCTAGAGATGATATTTTACAAGATTGTCAGAAACTTGTAACTGATGTATTAAGGGAACACCCAGAGGGATATAACATAGGTCGTTTTCGAAAACAATTTGCTGATAAATATGGCTATCAGCTTGACATCAAAAAGCTTGGTTATCAGAAGATGGCATACCTGATACAGATAATGCCTGGGGTTAAATTAGAATCCACTTACATTTACCCTTCTACTCCGGCCGTTTGTGCTTCTGACTCGAACACTTCTATCCTCAAAACTCGAGCAACCAATGCTAGTCATGAAAGATTCAACTCATATAATGAATTATCTGATACAGCCCCAAAAGAGTATAACACGGAATCTCCTTGGGAGGAATTAGGTCCTGTTTCTCTTAAAAGTTCTAGTCAGAATGATCTGGAATCAAATTTAACTCAAAATGCCATCGAACTGAATACACCTAAGTATCCTGATTACGAACCCATTGTCTCAGATGAGGATTTGTCTGAATCTGAAGGAGATAACTCTTTTTCAACTCAATCAGAAGAAGATCAAGTAAAGCCAAAATATGATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATTCCTGGCATAGCAGCAAGGAGGAAGAGAATAATGTCAAGAAATCCGAAAACATTGATGTCTTGGGCAATTCTCTGCTTGACATCTTAAATTCAGCCCCAGATACAAAACAGGGTATCCGCGATATCGTTTCCAACAAAGAAAAGCAAAGACCTCATAAGTATTCATTTGTTGTTGACCCAGCCTCACCTGACAATGACAAGTTTATTGGTGGGATATTAGATGGTCTGAAGAAAGAGGATGAGCCCAAGATGCATAACTGA 3276 0.4075 MNHLLRKNLLFFTSSRPSSQSRTLLVRFHLCEFSSSHTPYSHWKRHDEESRNVRVSVWWDFENCNVPAGVNVSKVAPAITDAVRANGIKGPVHITAFGDVYQISRPNQEALAFTGIHLNHIPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGMLHRLRMNNYNILLASPGKAPDVLRSAATIMWQWPSLLKGEDLTGKHFNHPPDGQFGSWYGNSKVPLENPFSATEQSTSSQNVHVTEINEPSSDLKVGGEVPKSVIRKIKNILSLHPKGISISELRAELTKRDVSLGKGIFGYKRLSRFLSSIPHVQLRHFRDGNYCVYLIPSAYHEPSESSTALSTVSAVKNEEMSCTTTPKLHSEDKDINRDLHETLSVSSSDERIFEDDSKSFQSTPLQGIPIEEDVSRKSYGYATTPMLHSEDKDMDRDTHRTPSVSSVHERIIEDGLKSLHSTPSQGKPIEDVSQKSSVGSEKVLDVSNAQLLENQLSSKDNDVYKTEIGSFKVRSIKFSDDEIVRSENVSPKVLEKYTTSGNSSMMENNDVVNCESGKSIAKNKHEDQPRKEVDGHSPYSSAVDDSLVDERPDVHPETYSKRSTFLSWIKSWWPFQKSNVKADAFTAYQNNVTSNFEDSKLSELDHTASNLETPKPLEPHQDVSHSGKPVLFSSDSFWNDLESFVFTPKGSLLISQSRSREVLAHKLQKYGPMVLKSSDENDIIQLVELLIAEKKWLEESPSHAFPFRVTQSVRKSTPMGLSNGTSGLRSLFLSKTSQSNSQKSFENEGEKHSHSTQQTGVSRPATETKYTEKSRDDILQDCQKLVTDVLREHPEGYNIGRFRKQFADKYGYQLDIKKLGYQKMAYLIQIMPGVKLESTYIYPSTPAVCASDSNTSILKTRATNASHERFNSYNELSDTAPKEYNTESPWEELGPVSLKSSSQNDLESNLTQNAIELNTPKYPDYEPIVSDEDLSESEGDNSFSTQSEEDQVKPKYDEQDSSFWQALDSWHSSKEEENNVKKSENIDVLGNSLLDILNSAPDTKQGIRDIVSNKEKQRPHKYSFVVDPASPDNDKFIGGILDGLKKEDEPKMHN 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 1061 1091 - -
Vivi3g02510 1091 Gene3D - 261 336 IPR041966 -
Vivi3g02510 1091 Pfam OST-HTH/LOTUS domain 264 327 IPR025605 -
Vivi3g02510 1091 Pfam OST-HTH/LOTUS domain 816 874 IPR025605 -
Vivi3g02510 1091 Pfam NYN domain 54 189 IPR021139 GO:0004540
Vivi3g02510 1091 Gene3D - 46 195 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 558 591 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 455 473 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 776 811 - -
Vivi3g02510 1091 ProSiteProfiles OST-type HTH domain profile. 815 889 IPR025605 -
Vivi3g02510 1091 CDD LOTUS 816 871 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 932 955 - -
Vivi3g02510 1091 Gene3D - 810 877 IPR041966 -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 916 996 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 425 444 - -
Vivi3g02510 1091 CDD PIN_limkain_b1_N_like 54 178 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 558 575 - -
Vivi3g02510 1091 PANTHER LIMKAIN B LKAP 38 824 IPR024768 GO:0005777|GO:0010468
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 1076 1091 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 424 444 - -
Vivi3g02510 1091 MobiDBLite consensus disorder prediction 454 473 - -
Vivi3g02510 1091 ProSiteProfiles OST-type HTH domain profile. 262 333 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02510 Vivi-Chr3 42064785 42070404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02510 53 201 C2H2 Transcription Factor Family AT5G61190 46.980 1.27e-38 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02510 3 42064785 42070404 Vivi3g02510 3 42064785 42070404 ECH