Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02502 ATGGCTGCAATGAACTCAAGTGTATTGGCATGTAGCTATGCCATCTCTGGTTCTGACCTCAATGCAAAGCTCATTTCCATGCCCTCTGTTGCAACACCAGTCGGAGTCTCAGGCTCCAAGTTGCCATCCATCAAGGCCCAGCAAGCCAGAATCCCCAAAGCCAAACAATCGGAAGGAAGGAGAAATGCCCTTGCCTTATTAGCAGCTACTCTTTTTACCACTGCTGTTTCAGCCAACAATTCATCCGCTAATGCTAGTGTATTTGATGAATACCTTGAGAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTAGCTAAACAGAAGAAAGTACCATTCATTTCTGAAGATTTGGATCTTGAATGTGAAGGAAAAGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 513 0.4308 MAAMNSSVLACSYAISGSDLNAKLISMPSVATPVGVSGSKLPSIKAQQARIPKAKQSEGRRNALALLAATLFTTAVSANNSSANASVFDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLDLECEGKDKYKCGSNVFWKW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02502 170 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 42 170 IPR008796 GO:0009522|GO:0015979
Vivi3g02502 170 Gene3D - 86 170 IPR044907 -
Vivi3g02502 170 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 170 IPR008796 GO:0009522|GO:0015979
Vivi3g02502 170 FunFam Photosystem I reaction center subunit N 86 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02502 Vivi-Chr3 41886134 41887200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02502 1 141 Calmodulin-binding Proteins AT5G64040 65.306 7.02e-56 172