Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02501 ATGGCTGCAATGAACTCAAGTGTATTGGCATGTAGCTATGCCATCTCTGGTTCTGACCTCAATGCAAAGCTCATTTCCATGCCCTCTGTTGCAACACCAGTCGGAGTCTCAGGCTCCAAGTTGCCATCCATCAAGGCCCAGCAAGCCAGAATCCCCAAAGCCAAACAATCGGAAGGAAGGAGAAATGCCCTTGCCTTATTAGCAGCTACTCTTTTTACCACTGCTGTTTCAGCCAACAATTCATCCGCTAATGCTAGTGTATTTGATGAATACCTTGAGAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGTTAGCTACTAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTAGCTAAACAGAAGTACCATTCATTTCTGAAGATTTGGATCTTGAATGTGAAGGAAAAGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGAAAAAATGACAACATTTTATTTGCCTAGTGTTGCTCTCTTTGAATTGTATCCAACTTCTCCTTGA 573 0.4206 MAAMNSSVLACSYAISGSDLNAKLISMPSVATPVGVSGSKLPSIKAQQARIPKAKQSEGRRNALALLAATLFTTAVSANNSSANASVFDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKYHSFLKIWILNVKEKTNTSVVLMFSGNGEKMTTFYLPSVALFELYPTSP 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02501 190 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 42 146 IPR008796 GO:0009522|GO:0015979
Vivi3g02501 190 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 146 IPR008796 GO:0009522|GO:0015979
Vivi3g02501 190 Gene3D - 86 161 IPR044907 -
Vivi3g02501 190 FunFam Photosystem I reaction center subunit N 86 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02501 Vivi-Chr3 41886125 41887200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02501 1 175 Calmodulin-binding Proteins AT5G64040 62.983 2.89e-70 209