Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02500 ATGTATGCTACTACTTCCTTTGTTTCACCACTTCTCCATGACCTTGAAATTTTCCACTCAAGAAGGATGTTACTTCACTCTCCAATTAACCAACCATCAAATTTAGGTAATCCTCCAATTTCCACAAATATTCATGATTCAAGTAAAGAATCATCCTATCTTGGAGATGGTAATTTTGATGCAAATGTTGTTATGGTACTCTCTGTCCTATTATGTGCTCTTATTTGTTCACTTTGTTTGAACTCAATCATAAGGTGTGCATTAAAGTGTTCCAATTTAGTTGTGACGAGTGGTGGTGGTAGTCATCACGCTAACACTCCAGCTCAAGCGACAAACACTGGAATCAAGAAGAAAGCTTTGAAGACTTTCACCACGGTGAGTTATTCGGCCGAGTTGAATCTTCCGAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAATTCACTAACGGTGATAAGGTGCGCCTTTTGCCAAAGTGTAACCACGGATTTCATGTTCGTTGTATTGACAAATGGCTAAGTTCGCATTCGTCGTGTCCTAAATGTAGACAATGTCTTATTGAGACATGTAAAAAAATTGTTGGATCACAAGGTAGTTCATCTCAATTACCTCAGCCTATGTTGTTTCCTGTTCCAGAAACAATTGTAACTATAGTGCCACTTGAACATGAAGGTTTGGTGCGAGACTATAGGGAGGTTAGCTAG 705 0.3915 MYATTSFVSPLLHDLEIFHSRRMLLHSPINQPSNLGNPPISTNIHDSSKESSYLGDGNFDANVVMVLSVLLCALICSLCLNSIIRCALKCSNLVVTSGGGSHHANTPAQATNTGIKKKALKTFTTVSYSAELNLPSLDSECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQGSSSQLPQPMLFPVPETIVTIVPLEHEGLVRDYREVS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02500 234 CDD RING-H2_EL5-like 140 183 - -
Vivi3g02500 234 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vivi3g02500 234 PANTHER RING-H2 FINGER PROTEIN ATL78 16 226 IPR044602 GO:0016567|GO:0016740
Vivi3g02500 234 Pfam Ring finger domain 140 183 IPR001841 -
Vivi3g02500 234 SMART ring_2 141 182 IPR001841 -
Vivi3g02500 234 FunFam RING-H2 finger protein ATL73 102 188 - -
Vivi3g02500 234 SUPERFAMILY RING/U-box 120 188 - -
Vivi3g02500 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02500 Vivi-Chr3 41836751 41837721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02500 22 187 C3H Transcription Factor Family AT3G10910 44.706 3.73e-42 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02500 3 41836751 41837721 Vivi3g02500 3 41836751 41837721 ECH
Vivi2g02734 2 122607356 122608303 Vivi3g02500 3 41836751 41837721 ECH
Vivi5g04410 5 141825076 141825965 Vivi3g02500 3 41836751 41837721 PCT