Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02494 ATGAGTTCGGTGAACACGGATTGCTCCGAGGAAGGTTCGGTGATTCCTGAGCCTCCAGATCCTGATATCATTGAAATTGATCCTACCGGTCGTTACCATAAGTATAAGGAAGTAATTGGCAAAGGAGCTTTCAAGACTGTCTATAAGGCATTTGATGAAATCACGGGTCTTGAAGTTGCGTGGAGTCAAGTTCGGATTGACGAGGTATTACAATCACCGGGTGACCTAGAAAGGCTGTATTCAGAAGTGCATCTGTTGAAATCTTTGAAGCATAGTAACATTGTAAGGTTCTACAATTCCTGGATTGATGACAAGCAAAGGAATGTTAACATGATAACTGAGTTGTTCACCTCAGGGAGCCTGAGACAGTACCGAAAGAAACACAAGAAGGTTGACATGAAAGCGGTTAAAGGATGGATAAGACAGATTTTGATGGGTTTAGTTTACCTCCATAATCATACCCCGCCTATTATACATAGGGATCTCAAGTGTGATAATGTATTTATAAATGGTCACCAAGGAGTCGTTAAGATCGGAGATCTCGGGTTGGCAACTCTCTTGAAGCAGAATAATGCCAAGAGTGTAATTGGAACTCCGGAGTTTATGGCGCCTGAATTGTATGATGAAGATTATAATGAATTGGCTGACATATATTCTTTTGGGATGTGCATGCTGGAGTTGGCTACTTCCGAGTATCCTTACCGAGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCGGTTTCTCTTTCTAAAATCAAAGATCCGGAAATAAAATCATTTATTGAGAAATGTCTTGTCCCGGCATCTCAAAGATTGTCAGCGAAGGAGCTTCTGATGGACCCTTTTCTTGAAGTGAATGGTTCAATAAAGAGTCGTCCTCTTCCATTACCAGATATCGTTCTACCTAAATATGGAGGCTTTGAAAATCGCTGTCTGATGTCAGAAGGTCCTGCTAGTGCGCGTATTGGATCCATATCAATGGATCTCGGCGATACCAATGAGAAACCATTGATAACTGTATTTTATAATTCTGTTGACGATGCACCACCTTCTCCGTGTATTGAGATCCGAAGGTTAGTGGGAGGTGATAGATTTTTTCTCAAAGGTGAAGGAAATGACGTGAATTCCGTGTCAATAGTTCTCCGGATAACTAATCAGGGCGGGCGAGCAAGAAATATCCATTTCATATTCTACCTCGATAGTGATACAGCCATCTCGGTGTCAAAAGAAATGGTTGAGCAACTTGAACTTGCCGAGCACAATGTTACTTTCATCGCCGAGTTAATTGATCTGTTACTGACAACATTGGTTCCTGTTTGGAAGCCGTGTGTAGCTATTGATCACTTAATTTCACCAAATGCTAAACGAGCTCATCTGAGCCAACTGAAACATGACTCGCTCTTGGCAAAATACAAGCAAAACTCAATAGATTATAACCAGACTGTGGCAGAATATATCGGTCCTTCAACCTCAAACGAGAGACTAGCTGAAAAAGAAAACATCGATAACTTGAATTTTGAAGAAGTTTCATCCCATGCATCAAACACTAATGATTTATGTTCCGTCACATCATACACTTCAGCAACATCTGATTATAACGAGAAGAATCTTTCTACTGCTTCATTCACGTCTGCTAGGTCGGGATTCACAGACTTCAACTTACCTACGGTGAATGGACGGAGTCAATCCAGGCATGCATCTGAGATCGGGGCATCCTCTGATGAAAAGAGCAAGTCTCCGAGCATCGAAAGTAACAATTTCTATGAATCTGAGGATGAGTCGAGAATAGAGTTAGAGAAAGTTGAACGGCAATATCAAGAGACAATGAAAGATTTAACCAAAAGAAGATATGAGGCCATCATGGAGATCAGAAAGAGGCTGTCAAAAAAAACACAATCATAA 1923 0.4093 MSSVNTDCSEEGSVIPEPPDPDIIEIDPTGRYHKYKEVIGKGAFKTVYKAFDEITGLEVAWSQVRIDEVLQSPGDLERLYSEVHLLKSLKHSNIVRFYNSWIDDKQRNVNMITELFTSGSLRQYRKKHKKVDMKAVKGWIRQILMGLVYLHNHTPPIIHRDLKCDNVFINGHQGVVKIGDLGLATLLKQNNAKSVIGTPEFMAPELYDEDYNELADIYSFGMCMLELATSEYPYRECRNSAQIYKKVSSGIKPVSLSKIKDPEIKSFIEKCLVPASQRLSAKELLMDPFLEVNGSIKSRPLPLPDIVLPKYGGFENRCLMSEGPASARIGSISMDLGDTNEKPLITVFYNSVDDAPPSPCIEIRRLVGGDRFFLKGEGNDVNSVSIVLRITNQGGRARNIHFIFYLDSDTAISVSKEMVEQLELAEHNVTFIAELIDLLLTTLVPVWKPCVAIDHLISPNAKRAHLSQLKHDSLLAKYKQNSIDYNQTVAEYIGPSTSNERLAEKENIDNLNFEEVSSHASNTNDLCSVTSYTSATSDYNEKNLSTASFTSARSGFTDFNLPTVNGRSQSRHASEIGASSDEKSKSPSIESNNFYESEDESRIELEKVERQYQETMKDLTKRRYEAIMEIRKRLSKKTQS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02494 640 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vivi3g02494 640 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Vivi3g02494 640 Gene3D - 382 451 - -
Vivi3g02494 640 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g02494 640 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Vivi3g02494 640 MobiDBLite consensus disorder prediction 560 601 - -
Vivi3g02494 640 Coils Coil 598 622 - -
Vivi3g02494 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vivi3g02494 640 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02494 640 MobiDBLite consensus disorder prediction 560 594 - -
Vivi3g02494 640 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Vivi3g02494 640 SUPERFAMILY Protein kinase-like (PK-like) 34 291 IPR011009 -
Vivi3g02494 640 CDD STKc_WNK 31 290 - -
Vivi3g02494 640 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02494 640 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 623 - -
Vivi3g02494 640 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02494 Vivi-Chr3 41727261 41730495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02494 133 464 MAP Kinase Kinase Kinase AT1G49160 66.867 2.14e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi3g02494 Pkinase 6.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02494 K08867 - gmx:121175054 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02494 3 41727261 41730495 Vivi3g02494 3 41727261 41730495 ECH
Vivi5g04418 5 141892346 141895728 Vivi3g02494 3 41727261 41730495 PCT