Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02492 ATGGTTAGAGAAAGAGAAAAAGCTATCGATCTATGCATCACTGTTCCCACTTTCTTCAAATGCCCAATCTCCCTCGACGTCATGAAATCTCCCGTTAGCCTCTGCACCGGTGTCACCTACGACCGTGCCAGTATCCAGCGCTGGCTAGACGATGGCAACAACACATGTCCTGCCACCATGCAGATTCTCAAAACTAAAGATTTCGTTCCGAATCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCACCGCCGGGTCGAACCGCCTTTTCTACCTTCAGTTCCTTCTAAAGATCAACTCCTTCAAACAATCACCGATTTAAGAACCTCTCCCGGTTCTCCCGGTCTAAACCGTATAAACCGGCTCGGCTTAATCACAAAAGCGGTTCGGTTCGGTCAGGATTCCGATCAGAACCGAGCTTTTCTCGCGAAATTAGACGGTTTTGTTTCTCTTATGGTTACTTTCCTCGACAATGTTGACGGGAGCGTTGAGTTTCTCGAACAGGTTTTAACGGCGTTAGGTTTAGTTCTGGAAAAAATCGAAGATCGTGACGGTTTAAAAAACGATATATTGAAAGGGAAGAACAAAAAATGTTTAGATTCTATGCTTCTTGTTTTACGAAGAGGAAGCAACAATTCGAGAATTGCAACCGCTAGGGTTTTGAAATTTATAGCTCTCGACGGTGAATCACAGATTCTGATAGCCGAGAACGAACCTCTGATAATTGAATTACTGAATTTATCGAAACCAGAGAAAGATCCGAAGGTGATTGAAAACTGTTTATCGTGTTTAGTAGCGATCTCGCAACCGAAAAGGAACAAGGTGAAACTGGTGAAATTCGGAGCAATGAAAACGTTGTCGAGGTTACTAACAGAGGCTAATACGACGGTGAAAGTGGTGGAGAAGGCGTTGAAGCTGGTGGAAAGCGCGTCGACGACGAGTGAGGGAAGGAAAGAGATGTGTGAGGACGCGGCGTGTGTGGCGGCGATACTGAATAAAGTTCTGAAGGTGTCGAACGTGGCGACGGGGCACGCGGTGACGATACTGTGGAGTGTGTGTTATCTGTTTCGGGATCAGAAAGCGCAAGAAGCGGTTACGCAGGCGAATGGGTTAACGAAGATACTGTTGTTGATACAGGGTTATTGTTCTCCTCAAGTGCGTCAAATGTGTACGGATTTGCTACAGATTTTTAGGGTTAACTCGAAATCGTGTCTTTCTTCTTATGAAACCAAGACATCACATATCATGCCATTTTGA 1266 0.4534 MVREREKAIDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRASIQRWLDDGNNTCPATMQILKTKDFVPNRTLHSLIQIWTDSVHRRVEPPFLPSVPSKDQLLQTITDLRTSPGSPGLNRINRLGLITKAVRFGQDSDQNRAFLAKLDGFVSLMVTFLDNVDGSVEFLEQVLTALGLVLEKIEDRDGLKNDILKGKNKKCLDSMLLVLRRGSNNSRIATARVLKFIALDGESQILIAENEPLIIELLNLSKPEKDPKVIENCLSCLVAISQPKRNKVKLVKFGAMKTLSRLLTEANTTVKVVEKALKLVESASTTSEGRKEMCEDAACVAAILNKVLKVSNVATGHAVTILWSVCYLFRDQKAQEAVTQANGLTKILLLIQGYCSPQVRQMCTDLLQIFRVNSKSCLSSYETKTSHIMPF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02492 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 87 IPR013083 -
Vivi3g02492 421 CDD RING-Ubox_PUB 16 68 IPR045210 -
Vivi3g02492 421 FunFam RING-type E3 ubiquitin transferase 7 87 - -
Vivi3g02492 421 Pfam U-box domain 15 83 IPR003613 GO:0004842|GO:0016567
Vivi3g02492 421 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 328 IPR000225 GO:0005515
Vivi3g02492 421 SMART Ubox_2 18 81 IPR003613 GO:0004842|GO:0016567
Vivi3g02492 421 Gene3D - 124 413 IPR011989 -
Vivi3g02492 421 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842|GO:0016567
Vivi3g02492 421 SUPERFAMILY RING/U-box 12 83 - -
Vivi3g02492 421 PANTHER WDSAM1 PROTEIN 14 409 IPR045185 GO:0061630
Vivi3g02492 421 SUPERFAMILY ARM repeat 136 403 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02492 Vivi-Chr3 41681786 41683490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02492 10 421 U-box Gene Family AT5G64660 50.236 5.75e-136 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02492 - - gmx:100799627 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02492 3 41681786 41683490 Vivi3g02492 3 41681786 41683490 ECH
Vivi3g02492 3 41681786 41683490 Vivi5g04426 5 141984281 141986372 ECH
Vivi5g04426 5 141984281 141986372 Vivi3g02492 3 41681786 41683490 PCT