Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02488 ATGCTGATCTCTGATGAAGGAGATAATGATGTGTTCTTTGATTCATTGGATTGTTTCTCACCTCGTCAAGAATCTGTTTTGATAAAGCAAAATTTTGGGTATGAGTTTTGGCTTAATGAGCCTCTTAGTGTGAAGGAAAGAAAGGAAATTTTTCTACAAGAGATGGGTTTTGTTGATGATTCTTCTGAAAACAAAATTGTGCACTCCGACGAGAGGATAATGGATTGCAGTGAAGCAGAATTGAATGATTGTGTTTTGTCTTCAATGGACAAAGCGACTTCTGAGGCGGGAGGCTTGTCGGAGAACAGAGATGATGATGATGAAAAAACTGATGCAAGTTTACAAGGAGAGGAGTTACAAGAGTTAAGACATAGAGAAGCTGAGACTGTAGAGGAATTCGGTAAAAAGAAAAAGAAAAACTGGTGGAAGCAATTTGTGAACAGTGGGAAACTAGCTAGAGGGATGGTTAGATCGAAGTTTATTAGCACGAGTACGGATGAAACTTGTCGAATCAATGTGAGGCGCAACAAGAAAAGCTGGAATGAGTTTAGTGCGGTGTATGGTGGACAAAAGATTAGAGCACATAAAGGTCTAATTTGGACTATGAAGTTTAGTCCCAGTGGGCAGTATCTAGCAACTGGAGGCGAAGATGGTGTTGTTCGTATATGGCTTGTTTCGTCGCTGAATGCTTCTAGTATTTGTTATGCTAAAGAAGTTAGTGCTGTTAGCAAATTGAAACATGGCGTGTCTTTTTCTTCGAAGAAATGTTGTCAATCGCCCGTTGTTGTTCCGAGTAAGATTCTCAAAATTGAGGAATCACCGCTTCAAGAACTATATGGACATTCCGGTGATGTGATGGACTTGGCTTGGTCTGATTCTGATATGCTCCTTTCCTCGTCTATGGATAAAACAGTTCGCATGTGGAAAATTGGTTATAATCAATGTTTAAAAGTCTTCCATCACAAAGATTATGTTACATGCATTCAATTCAACCCGGTTGATGAAAATAATTACTTCATAAGTGGCTCCATAGATGGAAAAGTCCGAATATGGGGAATACATGAAGAGCGAGTTGTTGACTGGGCAGACACGCGAGATGTCATTAGTGCTGTTAGTTATCAGCCAGACGGGAAGGGGTTTATAGTTGGTTCCCTTTGTGGTATTTGCCGCTTTTATGTAGCTTCAGGTAAACAATTCGTGCATAAGGCCAAGATTCGTGTCAACGAAAAGAAGAAGAGATCATCTGGCAACAAGATTACTGGCATTCAGTTTTCCCATAAAAACCATCGCAGAGTTATGATCACATCACGAGATTCCAAAGTTAGAATATTCGAAGATGCTGAACTTGTTCAGACATATAAAGGTCTTCCAATGTCAAGAAGTCAGATGTCTGGTTCATTTACATCAAGCGGAAATCACATAATTTCGGTTGGAGAGGACTCTCGTGTGTATATTTGGAACTTCAATGACTCGGGAAATTACTTTTCCAAACAAAGAAAAACAGACAGTTCTTGTGAGCATTTTCGCTCCAAGGGGGTTACGGTCGCAATACCTTGGTCAGGCATGACATCAGAAAGAAGCTGCTCTCTCAGCGACTTTGCCAACTATTCTTCCGAAAAACAACTCCAATTAGCGGCTGCTCCCAGTTTTAGAGAGTCGGAACGTTTTTCTTTTGGGAGTTGGTTCTCCATTGATGGTTCGTGCCGACGATCTATGACATGGCCCGAGGAGAAACTTCCCAGTTGGGATTCACCTCTATCAGAAATTGAATTTGATCATGAGGAGCTATCGTTTAAAGACCTATGGCATGAGAATCGTATACCAGAAACATGGGGACTCTCGGTTGTTGCAGCAGGTCTTGATGGAACCATCAAGACATTTCACAACTTTGGGTTTCCTGTTAGGCTTTAG 1911 0.4097 MLISDEGDNDVFFDSLDCFSPRQESVLIKQNFGYEFWLNEPLSVKERKEIFLQEMGFVDDSSENKIVHSDERIMDCSEAELNDCVLSSMDKATSEAGGLSENRDDDDEKTDASLQGEELQELRHREAETVEEFGKKKKKNWWKQFVNSGKLARGMVRSKFISTSTDETCRINVRRNKKSWNEFSAVYGGQKIRAHKGLIWTMKFSPSGQYLATGGEDGVVRIWLVSSLNASSICYAKEVSAVSKLKHGVSFSSKKCCQSPVVVPSKILKIEESPLQELYGHSGDVMDLAWSDSDMLLSSSMDKTVRMWKIGYNQCLKVFHHKDYVTCIQFNPVDENNYFISGSIDGKVRIWGIHEERVVDWADTRDVISAVSYQPDGKGFIVGSLCGICRFYVASGKQFVHKAKIRVNEKKKRSSGNKITGIQFSHKNHRRVMITSRDSKVRIFEDAELVQTYKGLPMSRSQMSGSFTSSGNHIISVGEDSRVYIWNFNDSGNYFSKQRKTDSSCEHFRSKGVTVAIPWSGMTSERSCSLSDFANYSSEKQLQLAAAPSFRESERFSFGSWFSIDGSCRRSMTWPEEKLPSWDSPLSEIEFDHEELSFKDLWHENRIPETWGLSVVAAGLDGTIKTFHNFGFPVRL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02488 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 361 IPR001680 GO:0005515
Vivi3g02488 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 351 - -
Vivi3g02488 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 318 IPR001680 GO:0005515
Vivi3g02488 636 PANTHER WD REPEAT DOMAIN 44 128 633 IPR040324 -
Vivi3g02488 636 SMART WD40_4 406 445 IPR001680 GO:0005515
Vivi3g02488 636 SMART WD40_4 354 393 IPR001680 GO:0005515
Vivi3g02488 636 SMART WD40_4 446 487 IPR001680 GO:0005515
Vivi3g02488 636 SMART WD40_4 271 309 IPR001680 GO:0005515
Vivi3g02488 636 SMART WD40_4 312 352 IPR001680 GO:0005515
Vivi3g02488 636 SMART WD40_4 185 224 IPR001680 GO:0005515
Vivi3g02488 636 SUPERFAMILY WD40 repeat-like 191 490 IPR036322 GO:0005515
Vivi3g02488 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 310 - -
Vivi3g02488 636 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Vivi3g02488 636 Pfam WD domain, G-beta repeat 192 223 IPR001680 GO:0005515
Vivi3g02488 636 Pfam WD domain, G-beta repeat 273 309 IPR001680 GO:0005515
Vivi3g02488 636 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Vivi3g02488 636 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Vivi3g02488 636 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Vivi3g02488 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 223 - -
Vivi3g02488 636 MobiDBLite consensus disorder prediction 94 114 - -
Vivi3g02488 636 MobiDBLite consensus disorder prediction 97 114 - -
Vivi3g02488 636 Gene3D - 184 520 IPR015943 GO:0005515
Vivi3g02488 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 223 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02488 Vivi-Chr3 41579766 41585577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02488 275 484 U-box Gene Family AT2G33340 26.457 5.95e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02488 K20241 - gmx:100801576 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02488 3 41579766 41585577 Vivi3g02488 3 41579766 41585577 ECH
Vivi5g04428 5 142057374 142062144 Vivi3g02488 3 41579766 41585577 PCT