Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02486 ATGGCAACCTCCGCAGCAGCACCACGTCAGTTGTCTCAGAAGGAAGCTGATATTCAGATGATGTTGGCGGCCGATGTCCACCTCGGCACCAAGAACTGTGACTTCCAAATGGAGCGTTACATTTTCAAACGCAGGAACGACGGGATTTATATTATCAATCTTGGAAAGACATGGGAGAAACTACAACTGGCTGCTAGGGTAATTGTTGCCATTGAAAACCCTCAGGATATCATTGTCCAATCTGCAAGGCCTTATGGACAGAGAGCCGTTCTTAAGTTTGCTCAGTACACTGGAGCTCATGCTATTGCAGGAAGACACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACCGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCCCTTGGAAACATTCCAACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGGAAGCACAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACCATTCGCCCTGGTCTTAAGTGGGATGTGATGGTGGATCTGTTCTTCTACAGAGAACCTGAAGAGGCCAAAGAGCAAGAGGAGGATGAAGTTCCTGTCCCAGATTACGCCATTGCTGACTTCAATGCAGCTCCATCAGATGGACAGTGGCCCACAGCCATTGAGCAACCATGGAATGATGCAGTTCCACAGCCTATTCCAGCAGTTCCTGCTGTCAACTGGACAGCCCCAGAAGCTGTTGCAGGGGAATGGGGTGAAGCTGTTCCACCTCCACAACAAATTCCTACTGCCGGAATTGAATCTGTTGCACCTACAGGCTGGGAATAA 897 0.4849 MATSAAAPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPVPDYAIADFNAAPSDGQWPTAIEQPWNDAVPQPIPAVPAVNWTAPEAVAGEWGEAVPPPQQIPTAGIESVAPTGWE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02486 298 MobiDBLite consensus disorder prediction 275 298 - -
Vivi3g02486 298 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 FunFam 40S ribosomal protein SA 17 223 - -
Vivi3g02486 298 NCBIfam 30S ribosomal protein S2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi3g02486 298 Hamap 40S ribosomal protein SA [rps-0]. 5 277 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vivi3g02486 298 PANTHER 40S RIBOSOMAL PROTEIN SA 6 284 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi3g02486 298 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Vivi3g02486 298 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vivi3g02486 298 Gene3D - 17 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02486 Vivi-Chr3 41540913 41542901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02486 5 290 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.653 7.77e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02486 K02998 - gmx:100805318 528.094