Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02485 ATGGCAACCTCCGCAGCAGCACCACGTCAGTTGTCTCAGAAGGAAGCTGATATTCAGATGATGTTGGCGGCCGATGTCCACCTCGGCACCAAGAACTGTGACTTCCAAATGGAGCGTTACATTTTCAAACGCAGGAACGACGGGATTTATATTATCAATCTTGGAAAGACATGGGAGAAACTACAACTGGCTGCTAGGGTAATTGTTGCCATTGAAAACCCTCAGGATATCATTGTCCAATCTGCAAGGCCTTATGGACAGAGAGCCGTTCTTAAGTTTGCTCAGTACACTGGAGCTCATGCTATTGCAGGAAGACACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCCTTCAGTGAGCCTCGTCTTCTCATCCTCACCGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCCCTTGGAAACATTCCAACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCCGCTAACAACAAGGGGAAGCACAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACCATTCGCCCTGGTCTTAAGTGGGATGTGATGGTGGATCTGTTCTTCTACAGAGAACCTGAAGAGGCCAAAGAGCAAGAGGAGGATGAAGTTCCTGTCCCAGATTACGCCATTGCTGACTTCAATGCAGCTCCATCAGATGGACAGTGGCCCACAGCCATTGAGCAACCATGGAATGATGCAGTTCCACAGCCTATTCCAGCAGTTCCTGCTGTCAACTGGACAGCCCCAGAAGCTGGGGAATGGGGTGAAGCTGTTCCACCTCCACAACAAATTCCTACTGCCGGAATTGAATCTGTTGCACCTACAGGCTGGGAATAA 891 0.4848 MATSAAAPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVPVPDYAIADFNAAPSDGQWPTAIEQPWNDAVPQPIPAVPAVNWTAPEAGEWGEAVPPPQQIPTAGIESVAPTGWE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02485 296 Hamap 40S ribosomal protein SA [rps-0]. 5 275 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vivi3g02485 296 Gene3D - 17 221 - -
Vivi3g02485 296 PANTHER 40S RIBOSOMAL PROTEIN SA 6 282 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi3g02485 296 MobiDBLite consensus disorder prediction 270 296 - -
Vivi3g02485 296 NCBIfam 30S ribosomal protein S2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi3g02485 296 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Vivi3g02485 296 FunFam 40S ribosomal protein SA 17 223 - -
Vivi3g02485 296 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi3g02485 296 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02485 Vivi-Chr3 41540913 41542901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02485 5 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.825 1.51e-152 426