Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02480 ATGGCTCCGGCGACCTCATCGCCTTCATCTCAGAAGCTCACGAGCTTCATCCACCGCACGCATGCACCGCACCACATTCGGAAAAAGACATTTGACTCGCCGCCGGTCAAGAAGTACAGGTCAATGGAGGATATATTGGCGAGGGCGAAGTACGCGGTGGTGGAGAAGGAGGATTACGGTAGCCTCATGTGCGAGCAATGTGGCACCGGGGAGCAGCCGGAGGAGCTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTGAGGCCGATTGTTGTGAGGATTCCGATTGGTTCCTGGATTTGCCCTAAGTGTTCAGGGGTGAAGAAAGTGAAAAAGTTCACGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGGATTTGCCTGATTTCAGAAGGAATAATTCTTCTTCTCGGGAAGCTATGAGGCGGCGAAGACGTCCAAGACCGCTGGTGTTACAAAAGAAAAGGAGAAGGTTGTTGCCCTTTGTTCCTACACTAGATCCGGCCAGGAGACTCAAACAAATGGCCTCCCTGGCTACTGCCTTAACCGCACTAAACATGAAATTCTGTAATAGCCTAACCTACTCTCCAGGAATGGCTCCCAGAGAAGCGAATCAGTCCACCTTTGAAAATGGTGGAATGCAGAATCTTAATAAGGAAGATACAAAAACCTTAGAGCGCTGCATAGCTATGACCAAACGAGGCAAATTCCCACCATTAATGGTGGTTTTTGATTCATGTCAAGGCTATACTGTGGAAGCTGATGGCCCTATAAAAGACATGACATTTATTGCTGAATACACCGGCGATGTGGATTTTATTAAGAATAGAGAAACTGATGATTGCGACAGTATGATGACGCTGCTTCTTTCAGGAAGCACTGCTACCAGTCTTGTTGCCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGAATCAACAATCACACTCCGGACGGTAAGAAGAAGCAGAACAGTAAATGTGTGAGATACGATGTTAATGGAGAATCGCGGGTCTTTTTGATTGCTACCCGAGATATTTCCAAGGGAGAGAGGCTTTACTATGATTATAATGGTTATGAGAATCAATACCCAACTCAACATTTTGTCTGA 1134 0.4621 MAPATSSPSSQKLTSFIHRTHAPHHIRKKTFDSPPVKKYRSMEDILARAKYAVVEKEDYGSLMCEQCGTGEQPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFTQRRILDFFGLPRDLPDFRRNNSSSREAMRRRRRPRPLVLQKKRRRLLPFVPTLDPARRLKQMASLATALTALNMKFCNSLTYSPGMAPREANQSTFENGGMQNLNKEDTKTLERCIAMTKRGKFPPLMVVFDSCQGYTVEADGPIKDMTFIAEYTGDVDFIKNRETDDCDSMMTLLLSGSTATSLVACADKRGNIARFISGINNHTPDGKKKQNSKCVRYDVNGESRVFLIATRDISKGERLYYDYNGYENQYPTQHFV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02480 377 ProSiteProfiles SET domain profile. 243 365 IPR001214 GO:0005515
Vivi3g02480 377 CDD PHD_RSF1 63 108 - -
Vivi3g02480 377 ProSiteProfiles Zinc finger PHD-type profile. 61 111 IPR019787 -
Vivi3g02480 377 CDD SET_ATXR5_6-like 240 377 - -
Vivi3g02480 377 SUPERFAMILY SET domain 219 365 IPR046341 -
Vivi3g02480 377 ProSitePatterns Zinc finger PHD-type signature. 64 108 IPR019786 -
Vivi3g02480 377 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 142 375 - -
Vivi3g02480 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 122 IPR013083 -
Vivi3g02480 377 Gene3D SET domain 149 377 IPR046341 -
Vivi3g02480 377 SMART PHD_3 63 109 IPR001965 -
Vivi3g02480 377 SUPERFAMILY FYVE/PHD zinc finger 34 109 IPR011011 -
Vivi3g02480 377 FunFam Histone-lysine N-methyltransferase ATXR5 148 377 - -
Vivi3g02480 377 Pfam PHD-finger 63 109 IPR019787 -
Vivi3g02480 377 Pfam SET domain 241 365 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02480 Vivi-Chr3 41487505 41491213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02480 36 116 C2H2 Transcription Factor Family AT3G01460 31.111 1.06e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g02480 SET 8.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02480 3 41487505 41491213 Vivi3g02480 3 41487505 41491213 ECH