Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02456 ATGTATTTTCTCAAGAGGAAGATTATCGGTAGGAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTCCCAGATAAATCTTTGCTCAAAAGTGGGGATTTGAAATGGTACTTCTTTAGCCCTGTAGGAAAGAAATATTGCACGGGAGGGAGGATGAATCGAGCGACTGAAATTGGGTACTGGAAGACTACAGGGAAGGATAGAGCAGTTGAACATAAGAATCAAGTGGTGGGGATGATTAGAACCCTGGTTTTTCACATTGGCAAAGCTCCTAAAGGAGACCGAACTGATTGGGTAATGCATGAATTCAGACTTGAAGACAAACATTTAGCTGACAAAGGCATTGCACAGAATTCCTACGTGATTTGTAGGGTATTTCAAAAGGAGGGTCCTGGTCCAAGGAATGGTGCTCAGTATGGTAAACCATTTGATGAGAAAGACTGGGATAGTGAAGAGGAAATTGATTGTTTGCAATCTGTCCCTGCTGCTGCTATGTCTTTACCAGCTCCAATTCTACCTAGCTCAAGCCATATTTCCGAAGAAAATGACATGCATCCCTCAACAAGTGGATGCATTGGACGGAACTCTTTATCATGTCTATCTAGATCAGTGCCCTCTGGCTTGCCACACCCTTCAGCTCCAAGCAATCAAATTGACGACGACATTTTATCCATGCTTGCTATTTTCAAAGATGATGAGGATACATTGGCAGGGAATGAAAACAACGGATCTGGGAAGGTTGATAATCCTGGTCAGGCAAGCAATGCGGAAGGCGAACCTTATTTAGACCCAAATGAGATTTTCGGAGACTTGGGAGATCTTGAAAGCTTGGTTGGATTGGATGATGCAGATGGCTTTTCCCATGGCCAAAAAGATGGATATACTAAAAATGTAATGCCTTCTACTGGTGGCGATGTCTCTTTGTTTTGTGACCCCCATAATGATTACTTGGAGTTGATTGACCTAGATGCGCCATTGTTGTAG 1008 0.4276 MYFLKRKIIGRKFPFDVIAELDIYKYAPWDLPDKSLLKSGDLKWYFFSPVGKKYCTGGRMNRATEIGYWKTTGKDRAVEHKNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLEDKHLADKGIAQNSYVICRVFQKEGPGPRNGAQYGKPFDEKDWDSEEEIDCLQSVPAAAMSLPAPILPSSSHISEENDMHPSTSGCIGRNSLSCLSRSVPSGLPHPSAPSNQIDDDILSMLAIFKDDEDTLAGNENNGSGKVDNPGQASNAEGEPYLDPNEIFGDLGDLESLVGLDDADGFSHGQKDGYTKNVMPSTGGDVSLFCDPHNDYLELIDLDAPLL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02456 335 SUPERFAMILY NAC domain 1 136 IPR036093 GO:0003677|GO:0006355
Vivi3g02456 335 Pfam No apical meristem (NAM) protein 2 113 IPR003441 GO:0003677|GO:0006355
Vivi3g02456 335 Gene3D NAC domain 1 138 IPR036093 GO:0003677|GO:0006355
Vivi3g02456 335 FunFam Nac domain-containing protein 86 1 139 - -
Vivi3g02456 335 MobiDBLite consensus disorder prediction 243 269 - -
Vivi3g02456 335 ProSiteProfiles NAC domain profile. 1 136 IPR003441 GO:0003677|GO:0006355
Vivi3g02456 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02456 Vivi-Chr3 41218810 41224987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02456 2 249 NAC Transcription Factor Family AT5G09330 49.071 4.45e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g02456 NAM 5.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02456 - - adu:107470479 429.098