Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02455 ATGGCCGAAACAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGATGTTGAGCTCGTTATGTATTTTCTCAAGAGGAAGATTATCGGTAGGAAGTTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTCCCAGATAAATCTTTGCTCAAAAGTGGGGATTTGAAATGGTACTTCTTTAGCCCTGTAGGAAAGAAATATTGCACGGGAGGGAGGATGAATCGAGCGACTGAAATTGGGTACTGGAAGACTACAGGGAAGGATAGAGCAGTTGAACATAAGAATCAAGTGGTGGGGATGATTAGAACCCTGGTTTTTCACATTGGCAAAGCTCCTAAAGGAGACCGAACTGATTGGGTAATGCATGAATTCAGACTTGAAGACAAACATTTAGCTGACAAAGGCATTGCACAGAATTCCTACGTGATTTGTAGGGTATTTCAAAAGGAGGGTCCTGGTCCAAGGAATGGTGCTCAGTATGGTAAACCATTTGATGAGAAAGACTGGGATAGTGAAGAGGAAATTGATTGTTTGCAATCTGTCCCTGCTGCTGCTATGTCTTTACCAGCTCCAATTCTACCTAGCTCAAGCCATATTTCCGAAGAAAATGACATGCATCCCTCAACAAGTGGATGCATTGGACGGAACTCTTTATCATGTCTATCTAGATCAGTGCCCTCTGGCTTGCCACACCCTTCAGCTCCAAGCAATCAAATTGACGACGACATTTTATCCATGCTTGCTATTTTCAAAGATGATGAGGATACATTGGCAGGGAATGAAAACAACGGATCTGGGGTTGATAATCCTGGTCAGGCAAGCAATGCGGAAGGCGAACCTTATTTAGACCCAAATGAGATTTTCGGAGACTTGGGAGATCTTGAAAGCTTGGTTGGATTGGATGATGCAGATGGCTTTTCCCATGGCCAAAAAGATGGATATACTAAAAATGTAATGCCTTCTACTGGTGGCGATGTCTCTTTGTTTTGTGACCCCCATAATGATTACTTGGAGTTGATTGACCTAGATGCGCCATTGTTGTAG 1065 0.4291 MAETKLIPGFRFHPTDVELVMYFLKRKIIGRKFPFDVIAELDIYKYAPWDLPDKSLLKSGDLKWYFFSPVGKKYCTGGRMNRATEIGYWKTTGKDRAVEHKNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLEDKHLADKGIAQNSYVICRVFQKEGPGPRNGAQYGKPFDEKDWDSEEEIDCLQSVPAAAMSLPAPILPSSSHISEENDMHPSTSGCIGRNSLSCLSRSVPSGLPHPSAPSNQIDDDILSMLAIFKDDEDTLAGNENNGSGVDNPGQASNAEGEPYLDPNEIFGDLGDLESLVGLDDADGFSHGQKDGYTKNVMPSTGGDVSLFCDPHNDYLELIDLDAPLL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02455 354 MobiDBLite consensus disorder prediction 263 287 - -
Vivi3g02455 354 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Vivi3g02455 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 212 - -
Vivi3g02455 354 FunFam Nac domain-containing protein 86 15 159 - -
Vivi3g02455 354 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vivi3g02455 354 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vivi3g02455 354 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02455 Vivi-Chr3 41218810 41224990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02455 1 269 NAC Transcription Factor Family AT5G09330 51.034 4.61e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g02455 NAM 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02455 - - adu:107470479 456.062