Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02442 ATGATTCTTTCCATGAACGAAGCTCAAACTGAACTCACAATTCCTCACTTGTTTAGATGCCCCATAAGCCTTGATTTGTTGGAAGATCCAGTGACTTTAACCACTGGCCAAACCTATGATAGATCAAGCATAGAGAAATGGATTTCCGCAGATTCACATCAAAATTGTTACATGGAGTTTGTTGAGTTAGCACTTTCTTGCATTGCTAAACTGTTGCCTATTGTAAATTTGGAACCCTTAAATATCATCAAAGATGAATCAAAGTTGAAAAAGTTCATATTTTTGTTTGAAAAAGGAACTATTTCAATGAAGACTAGTTTGTGTCTTGTTATAGATTACTCAACAACAGCATCACAAACAGAAGAGGTTTGTGAAATACTAGGAAACTCACAGAAACTAGTCCATGAAATTGTTCAAGTTATTGTTAACAAGAGTTCTGATAATCTTTCTGAGGCTGCAGTTAAGGCCTTATCAGCATTATGTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAGGAGGAGCAATAGATGGAATCATAAGATACATTTCAAGATGTGATAATACAAGGCAGAAGAATTTGGCTCCACTAGCAATGGCAACAATGATGAAGCTGTTGGTTTTGGAGAGTGGTAAGGAGGCATTGGTGAATCATGTGAATGGGATTGAGACATTGGTGAAGATGGTTTTCAAGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAGGTGGCTATTGGAGCTGGTGTTTTGAGTCAGTTGTTGTTTCTTTTGCAGAGTCAGTGTGGTACTAAGACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCAAAGTGGAGTGAGGAATCAATGCATTAG 906 0.372 MILSMNEAQTELTIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISADSHQNCYMEFVELALSCIAKLLPIVNLEPLNIIKDESKLKKFIFLFEKGTISMKTSLCLVIDYSTTASQTEEVCEILGNSQKLVHEIVQVIVNKSSDNLSEAAVKALSALCSLESNKESLVKGGAIDGIIRYISRCDNTRQKNLAPLAMATMMKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESMH 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02442 301 SUPERFAMILY RING/U-box 8 56 - -
Vivi3g02442 301 Pfam U-box domain 14 51 IPR003613 GO:0004842|GO:0016567
Vivi3g02442 301 SMART Ubox_2 17 86 IPR003613 GO:0004842|GO:0016567
Vivi3g02442 301 CDD RING-Ubox_PUB 15 56 IPR045210 -
Vivi3g02442 301 PANTHER WDSAM1 PROTEIN 11 56 IPR045185 GO:0061630
Vivi3g02442 301 Gene3D - 109 299 IPR011989 -
Vivi3g02442 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 70 IPR013083 -
Vivi3g02442 301 ProSiteProfiles U-box domain profile. 13 93 IPR003613 GO:0004842|GO:0016567
Vivi3g02442 301 SUPERFAMILY ARM repeat 122 291 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02442 Vivi-Chr3 41075688 41077631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02442 12 56 U-box Gene Family AT3G19380 60.000 7.53e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02442 - - mtr:11418942 496.508