Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02441 ATGATTCTTTCCATGAACGAAGCTCAAACTGAACTCACAATTCCTCACTTGTTTAGATGCCCCATAAGCCTTGATTTGTTGGAAGATCCAGTGACTTTAACCACTGGCCAAACCTATGATAGATCAAGCATAGAGAAATGGATTTCCGCAGGTAATTTCACATGTCCTGTAACAATGCAGAAGCTTCATGATTTATCTTTTGTTCCTAATCACACTCTTCGCCATTTGATTAATCAATGGCTTCAGCTTGGTTCACACTTTCATCACTCTTGTAATAACAATAATAATACCATAGATTACTTAGCTACAATAAAACACACTCTTGAATCTCATGATTCATCATCTCTAGAAACCAAGTTCAAAGCACTTGAGAAAATCAGTGTTCTTTCTGATGAGTATTGTTCTTTCAGAAAATCTTGCTTCCAACAACTTAGTTTCTTAGCTTTACTTTTGGAACTTGTTTTTGGTTTATCAGATTCACATCAAAATTGTTACATGGAGTTTGTTGAGTTAGCACTTTCTTGCATTGCTAAACTGTTGCCTATTGTAAATTTGGAACCCTTAAATATCATCAAAGATGAATCAAAGTTGAAAAAGTTCATATTTTTGTTTGAAAAAGGAACTATTTCAATGAAGACTAGTTTGTGTCTTGTTATAGATTACTCAACAACAGCATCACAAACAGAAGAGGTTTGTGAAATACTAGGAAACTCACAGAAACTAGTCCATGAAATTGTTCAAGTTATTGTTAACAAGAGTTCTGATAATCTTTCTGAGGCTGCAGTTAAGGCCTTATCAGCATTATGTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAGGAGGAGCAATAGATGGAATCATAAGATACATTTCAAGATGTGATAATACAAGGCAGAAGAATTTGGCTCCACTAGCAATGGCAACAATGATGAAGCTGTTGGTTTTGGAGAGTGGTAAGGAGGCATTGGTGAATCATGTGAATGGGATTGAGACATTGGTGAAGATGGTTTTCAAGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAGGTGGCTATTGGAGCTGGTGTTTTGAGTCAGTTGTTGTTTCTTTTGCAGAGTCAGTGTGGTACTAAGACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCAAAGTGGAGTGAGGAATCAATGCATTAG 1230 0.361 MILSMNEAQTELTIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISAGNFTCPVTMQKLHDLSFVPNHTLRHLINQWLQLGSHFHHSCNNNNNTIDYLATIKHTLESHDSSSLETKFKALEKISVLSDEYCSFRKSCFQQLSFLALLLELVFGLSDSHQNCYMEFVELALSCIAKLLPIVNLEPLNIIKDESKLKKFIFLFEKGTISMKTSLCLVIDYSTTASQTEEVCEILGNSQKLVHEIVQVIVNKSSDNLSEAAVKALSALCSLESNKESLVKGGAIDGIIRYISRCDNTRQKNLAPLAMATMMKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESMH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02441 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 94 IPR013083 -
Vivi3g02441 409 Gene3D - 95 407 IPR011989 -
Vivi3g02441 409 PANTHER WDSAM1 PROTEIN 11 406 IPR045185 GO:0061630
Vivi3g02441 409 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vivi3g02441 409 FunFam RING-type E3 ubiquitin transferase 14 85 - -
Vivi3g02441 409 CDD RING-Ubox_PUB 15 62 IPR045210 -
Vivi3g02441 409 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Vivi3g02441 409 SUPERFAMILY RING/U-box 8 82 - -
Vivi3g02441 409 Pfam U-box domain 14 82 IPR003613 GO:0004842|GO:0016567
Vivi3g02441 409 SUPERFAMILY ARM repeat 113 399 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02441 Vivi-Chr3 41075688 41077631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02441 12 407 U-box Gene Family AT1G49780 30.000 2.69e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02441 - - gmx:100815247 533.487