Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02423 ATGAACAAAAGCAACGCACGAAAGCGTCCGGCGCCGCCGTCGCAACAACCGCCGACAAAACAGGCACTAGCACCAGAAGATGAGTTCGTCGACGAAGACGTGTTCCTGGACGAAACCCTCATCTCCGAAGATGAAGAATCCGCAATCCTCCGCGACATGGAACAACGTCAAGCCCTAGCTGCTCGTTTATCCAAGTGGACGCGTCCTCCTCTCTCACAGGACTATGTCTCTCAATCTTGTAGCATTCTTTTTCAGCAGCTAGAGATTGATTACGTGATTGGAGAGAGTCATAAAGAGTTGCTACCTAGCTCGTCTGGACCTGCTGCCATAATTAGAATATTTGGAGTGACGAAGGAAGGACATAGTGTTTGCTGCAAGGTTCACGGGTTTGAACCATATTTCTACATCAGCTGCCCTCCTGGAATGGGACCAGATGATATCTCCCATTTTCATCAAATTCTCGAGGCTAGGATGAGAGAAGCCAATAGAAACAGCAATGTAGGAAAATTTGTTCGTCGTGTTGAAATGGTGCAAAGAAGGAGCATTATGTACTATCAGCAATTAAAATCCCATCCCTTTCTCAAAATTGTTGTTGCACTCCCAACGATGGTTGCTAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTTGGCATGAAAAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCTCTTCGTTTCATGATTGATTGCAGCATAGTTGGCGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAGGCAACAAAAAGCTTGTCATACTGCCAGTTAGAGTTTGATTGCTTGTATTCCGACTTGACTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGGATTTTGAGTTTTGACATTGAATGTGCTGGTCGCAAAGGACATTTCCCCGAACCTACCCAAGATCCTGTGATCCAGATTGCGAATCTGGTAACTTTACAAGGAGAAGACCAGCCATTAATTCGTAACGTGATGACTCTTAATTCATGTTCCCCTATTGTTGGTGTTGATGTGATGTCATTTGATAAAGAAGAAGAAGTCCTGCTAGCTTGGAGGGATTTCATCCGTGAAGTAGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCGTATCTTATTGAGAGAGCCGCTGCCCTAAAAATAGCTGAATTTCCAATTCTAGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTTTCATCAAGGCAGTACGGGACCAGGGAAAGTAAAGAAATCTCCATAGAAGGGAGAGTTCAGTTTGATTTGTTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCTTTGAATTCTGTGTCGGCACATTTCCTTTCTGAGCAGAAGGAAGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACACGAAGGCGCCTTGCAGTTTATTGCTTGAAGGATGCATATCTCCCCCAGCGACTTTTGGATAAATTGATGTTCGTTTACAATTATGTGGAAATGGCTCGAGTTACTGGAGTTCCAATTTCCTTTCTACTTTCCAGGGGCCAAAGCATAAAGGTGCTTTCTCAACTTCTTAGGAAGGCAAAACAAAAGAATTTGGTCATCCCTAATGCCAAGCAGGCAGGGTCAGAACAAGGAACATTTGAAGGCGCCACTGTTTTAGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCTTCCTTGTATCCGTCTATTATGATGGCATATAATTTATGTTATTGCACACTGGTGACCCCTGAAAATGCTCGCAATTTCAACATCCCTCCGGAGTCAGTGTACAAAACACCATCTGGTGAAACATTTGTTAAATCTAATTTACAGAAGGGCATACTTCCTGAAATTCTTGAGGAGCTATTAGCAGCACGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTTCTAGATGGCAGACAGTTGGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTATTGGTCAGTTACCTTGCTTAGAGATATCGTCGAGTGTAACAAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTTGTGGAAGATAAATTCACAACAACTAATGGCTACGAACACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCTATGAACCTGGGGAGAGAAGCTGCTGAATATATTAGCGGAACTTTCATAAAACCTATCAAGCTAGAATTTGAGAAGATTTACTATCCATATCTTCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCGGACCATTTTGACAAAATGGACACTAAAGGTATTGAAACAGTCCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAACAGATTGCCTTCACAAAATACTGATTGACAGGGACATTCCCGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTTATTACGAAGGGTTTGACAAAAACAGGAGATGATTATGAAGTAAAGACAGCTCATGTTGAACTCGCTGAAAGAATGCGCAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTTATTATTGAAGCTGCCAAAGGTGCCAAGGCTTACGAGAAATCAGAGGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCGTCAGTACTACCTTGACAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTAAAGAATGCCAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTTTAAATCTACTCCGTCAAACAGCGGTATAATGAAATTTGCCAAGAAACAGTCTACTTGCATTGGTTGCAAAGCTTTACTTAGTAATGGAGACCACACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAATTGTACTGTAAAACTGTAGCTCAAGTGTCGGATCTTGAGAAACTTTTTGGGAGGTTGTGGACACAGTGTCAAGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTATCGACGCAAGAAGGCACAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACAGATGGAACTTCTAA 3255 0.4175 MNKSNARKRPAPPSQQPPTKQALAPEDEFVDEDVFLDETLISEDEESAILRDMEQRQALAARLSKWTRPPLSQDYVSQSCSILFQQLEIDYVIGESHKELLPSSSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMGPDDISHFHQILEARMREANRNSNVGKFVRRVEMVQRRSIMYYQQLKSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCSIVGGNWIEIPAGKYKKATKSLSYCQLEFDCLYSDLTSHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQIANLVTLQGEDQPLIRNVMTLNSCSPIVGVDVMSFDKEEEVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAAALKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEISIEGRVQFDLFQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARNFNIPPESVYKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTTNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTFIKPIKLEFEKIYYPYLLISKKRYAGLFWTKPDHFDKMDTKGIETVRRDNCLLVKNLVTDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATAPNVGDRVPYVIIEAAKGAKAYEKSEDPIYVLENNIPIDRQYYLDNQISKPILRIFEPILKNASKELLHGSHTRSIFKSTPSNSGIMKFAKKQSTCIGCKALLSNGDHTLCSHCKGREAELYCKTVAQVSDLEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02423 1084 SUPERFAMILY DNA/RNA polymerases 549 959 IPR043502 -
Vivi3g02423 1084 PRINTS DNA-directed DNA-polymerase family B signature 583 596 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi3g02423 1084 PRINTS DNA-directed DNA-polymerase family B signature 736 744 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi3g02423 1084 PRINTS DNA-directed DNA-polymerase family B signature 675 687 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi3g02423 1084 NCBIfam DNA polymerase (pol2) 546 955 - -
Vivi3g02423 1084 Gene3D Palm domain of DNA polymerase 566 795 IPR023211 -
Vivi3g02423 1084 FunFam DNA polymerase 331 564 - -
Vivi3g02423 1084 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 67 1050 - -
Vivi3g02423 1084 FunFam DNA polymerase 812 968 - -
Vivi3g02423 1084 CDD DNA_polB_delta_exo 287 516 - -
Vivi3g02423 1084 Gene3D - 812 967 IPR042087 -
Vivi3g02423 1084 SUPERFAMILY Ribonuclease H-like 108 530 IPR012337 -
Vivi3g02423 1084 Pfam C4-type zinc-finger of DNA polymerase delta 994 1065 IPR025687 -
Vivi3g02423 1084 Gene3D - 292 510 IPR036397 GO:0003676
Vivi3g02423 1084 Pfam DNA polymerase family B, exonuclease domain 117 460 IPR006133 -
Vivi3g02423 1084 CDD POLBc_delta 565 958 - -
Vivi3g02423 1084 FunFam DNA polymerase 639 691 - -
Vivi3g02423 1084 Gene3D DNA Polymerase, chain B, domain 1 88 263 - -
Vivi3g02423 1084 SMART polmehr3 291 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi3g02423 1084 MobiDBLite consensus disorder prediction 1 28 - -
Vivi3g02423 1084 ProSitePatterns DNA polymerase family B signature. 738 746 IPR017964 GO:0000166|GO:0003676
Vivi3g02423 1084 Pfam DNA polymerase family B 524 957 IPR006134 GO:0000166|GO:0003677
Vivi3g02423 1084 Gene3D Helix hairpin bin 639 691 - -
Vivi3g02423 1084 FunFam DNA polymerase 88 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02423 Vivi-Chr3 40699798 40715020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02423 26 1084 Core DNA Replication Machinery Family AT5G63960 82.020 0.0 1851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02423 K02327 - gmx:100817379 1975.67