Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02422 ATGAAGTTAATCGACGACGGCGCCGGTGGCCGGAAAGTGTTGGTCGGAGTTAAATTAGATCCCCGCAGCCGCGAGTTGCTGACGTGGGCACTCGTTAAGGTCGCTGAGCCCGGTGACCTCGTCATCGCGCTTCACGTTCTCGACACCGTAACTGAGGGAACATCGTCGTTGCTATCTCTGGTGAAGACGTTCGATTCAGTTCTCGCCGTTTACGAAGGCTTCTGCAATTTGAAGCAGGTTGATCTTAGGTTGAAAGTGTGTAGAGGTGATTCGGTTCGGAAGCTTCTAGTGCAAGAGGCGAAGGCGTTTGGAGTTTCGACGGTGATTCTAGGAACTTCGAAATCTCATCATGCAATTCGGTCGTCTTCGTGGGTGGCTAAGTATTGCGCCAAGAAATTGCATAAGTGTGTTTCTGTTTTCGCTGTTGATAATGGGAAAATCGCTTTCCATAGAGAAGCTAGTGATAAAGAGAAATTACAGGAAGGTACACATTTATCATCAAAGTCGTTGGTGATTTTTACTAATAAAAGTGTGAAGAATTGTGAAAGTTGTGCTCTGCGAGAGATTTCTGAAACTGAATACAAGATTTCTGAAAATGAATATAATCAAGGGGAGTTGTTGTTTGATGATTGTGAAACGGAAAACCCGCTTGCTTTGGTACCGTTTGAAAAACACGAAGATGATTCCGTAGTGGGTAATTCTAAACAGACAAAACCTGGTTGGTCACTCATTCGGAATGTATTTCAGCACAAAAAGCATACAGCTAAGTCTTCACCCAAAAATACATTTGTTTTTCAACGGGCAATACGACATTCCGGAAGTCATTCTTCAGCTGTAGTGTATCCAGATCATAAACAGATTAATGTTGATCAAATTGACGAGTCTACCCTGGATGGGGAGAGTGGTGCCATTGTGCCGTTTGGATCTGCTATTATCTTACCTCCTCCCACCCTTTGCAGTGATGGCGGTAGCCTTCCTGAAGAATTGTTGGTTTTACGAGAGAAGTACTCGGCTTCATGTAGATTGTATAGTTTGCAGGAACTTGTAGCTGCAACCATCAACTTCTCATCCGAAAATTTGGTTGGCAAAGGTGGCAGTAGTGATGTTTACAGAGGGTGTCTTCCCGAAGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCGTCTGAGAATGTTGTACAAGAGTTTGCTCAAGAAGTTGAGATTGTTACAACTTTGCATCATAAGAACACAATATCTCTATCTGGTTTTTGTCTAGAGGGAAACCATTTATTACTGGTTTATGATTTTTTATCAAGAGGAAGCCTAGAAGAAAACCTTCACGGTAACAGAATTGACTATAATTCATTTGGCTGGCAAGAGAGGTACCGAGTGGCTGTAGGTGTAGCCGAGGCCTTGGATTATCTGCATAATGGCAGTGCCCGAGCAGTAATCCATAGGGATGTCAAATCTTCGAATATCCTTCTTTCAGATGATTTTGAGGCACAGCTCTCAGATTTTGGACTGGCTAGTTGGGGTTCTTCTTCTTCTCATATTATTTGTACTGATGTTGCCGGAACATTTGGGTACCTAGCTCCTGAATATTTTATGCACGGTAGAGTTACCGACAAAATTGACGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTATCCAATAGGAAACCCATTAACAACGAATCTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACATCAATCTTGAAAAGTGGGAAGATTTCCCAGTTGCTTGACCCAAGCCTTGGCAGTGAATACAACGATTGTCAGATCAAGAGAATGATTTTAGCTGCTACTCTTTGTATTAGACGGGTTCCTAGATTGCGACCTCAAATCCGAGTTATACTGAAACTTCTTCACGGTGATGAAGAAATAACACGATGGGCAGAACAAGAAGTCTGTGCACCAGAGACACATGATGGATTTGATGAGGAACCAGTTCGAACAAATATCCAGTCCCACCTTAACCTTGCTTTGCTGGACGTGGAGGATGATGCAGTTTCTATCAGTAGCACTGAGCAGACTGTCTCATTGGAGGATTATTTGCAAGGAAGATGGAGTCGCTGCTCAAGTTTTGACTAA 2100 0.4324 MKLIDDGAGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTVTEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGDSVRKLLVQEAKAFGVSTVILGTSKSHHAIRSSSWVAKYCAKKLHKCVSVFAVDNGKIAFHREASDKEKLQEGTHLSSKSLVIFTNKSVKNCESCALREISETEYKISENEYNQGELLFDDCETENPLALVPFEKHEDDSVVGNSKQTKPGWSLIRNVFQHKKHTAKSSPKNTFVFQRAIRHSGSHSSAVVYPDHKQINVDQIDESTLDGESGAIVPFGSAIILPPPTLCSDGGSLPEELLVLREKYSASCRLYSLQELVAATINFSSENLVGKGGSSDVYRGCLPEGKELAVKILKPSENVVQEFAQEVEIVTTLHHKNTISLSGFCLEGNHLLLVYDFLSRGSLEENLHGNRIDYNSFGWQERYRVAVGVAEALDYLHNGSARAVIHRDVKSSNILLSDDFEAQLSDFGLASWGSSSSHIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNESPKGQESLVMWATSILKSGKISQLLDPSLGSEYNDCQIKRMILAATLCIRRVPRLRPQIRVILKLLHGDEEITRWAEQEVCAPETHDGFDEEPVRTNIQSHLNLALLDVEDDAVSISSTEQTVSLEDYLQGRWSRCSSFD 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02422 699 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vivi3g02422 699 Gene3D Transferase(Phosphotransferase) domain 1 430 642 - -
Vivi3g02422 699 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Vivi3g02422 699 ProSiteProfiles Protein kinase domain profile. 355 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02422 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vivi3g02422 699 CDD USP_Like 12 137 - -
Vivi3g02422 699 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
Vivi3g02422 699 SMART serkin_6 355 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02422 699 Gene3D HUPs 10 143 IPR014729 -
Vivi3g02422 699 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 324 429 - -
Vivi3g02422 699 Pfam Protein kinase domain 357 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02422 699 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 116 - -
Vivi3g02422 699 Pfam Universal stress protein family 11 137 IPR006016 -
Vivi3g02422 699 PANTHER OS08G0249100 PROTEIN 66 661 IPR046958 -
Vivi3g02422 699 SUPERFAMILY Protein kinase-like (PK-like) 337 633 IPR011009 -
Vivi3g02422 699 FunFam Putative receptor-like serine/threonine-protein kinase 430 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02422 Vivi-Chr3 40684267 40687919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02422 342 618 Trihelix Transcription Factor Family AT1G68690 44.681 4.64e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi3g02422 Pkinase 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02422 - - gmx:100815722 1117.06