Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02414 ATGTCTGCAACTGGTAAGGGCAAGAAGCGCGAGGAGCACGACCAAGCTTCCGATGGCGACTCTGAAGGCCGTGCGCCTGCCAAAAAGGTTCTCAAGAAAGATTCCGATGACGATAACTCGGATGACATCACTGTCTGTGAGATAGGGAAGAACAGGAAGGTTACTGTGAGGATCTGGCAGGGTAAGATTTGGGTCGACATTCGTGAGTTTTACATCAAAGATGGGAAGCAGTTGCCCGGCAAAAAAGGTATCTCTCTGTCCATGGATCAGTGGAATGTGCTTCGTGATCATATTGAAGACATTGACAAGGCTGTCGTTGAGAAGTCTTAG 330 0.4848 MSATGKGKKREEHDQASDGDSEGRAPAKKVLKKDSDDDNSDDITVCEIGKNRKVTVRIWQGKIWVDIREFYIKDGKQLPGKKGISLSMDQWNVLRDHIEDIDKAVVEKS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02414 109 Gene3D Transcriptional Coactivator Pc4; Chain A 35 109 IPR009044 GO:0003677|GO:0006355
Vivi3g02414 109 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 19 108 IPR045125 GO:0003713|GO:0060261
Vivi3g02414 109 FunFam Putative transcriptional co-activator 36 109 - -
Vivi3g02414 109 MobiDBLite consensus disorder prediction 1 43 - -
Vivi3g02414 109 Pfam Transcriptional Coactivator p15 (PC4) 46 97 IPR003173 GO:0003677|GO:0006355
Vivi3g02414 109 SUPERFAMILY ssDNA-binding transcriptional regulator domain 45 105 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02414 Vivi-Chr3 40556173 40558285 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vivi3g02414 PC4 2.7e-23 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02414 K25815 - jre:108983376 145.976