Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02384 ATGCAAGGTGAATTAGAGTTACCACCTGGTTTCAGATTTCATCCAACCGATGAAGAATTGGTGAATCATTACTTGTGTAGAAAATGTGCTGGACATTCAATTTCTGTTCCCGTTGTTAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTACCTGAAATGGGTTATCAAAGTGAGAAAGAATGGTACTTTTTCTCTCCGAGAGATCGAAAATACCCGAACGGTTCTCGGCCTAACCGGGCTGCTGGAAGTGGTTACTGGAAGGCTACCGGGGCTGATAAACCGATTGGGAAAGTGAAAGCGAAGGGGATAAAAAAGGCACTGGTTTTCTATGCTGGCAAAGCCCCCAAAGGAGTGAAAACTAATTGGATTATGCATGAGTACCGTCTTGCCAACGTTGATAGGTCCGCCGGCAAGAAAAACAACTTGAGGCTTGATGATTGGGTGTTGTGTAGAATTTACAACAAGAAAGGAAAGATTGAGAAATTCAACACAGGCAACACACAAGAGGTTCATAATTACTATCAGCATGAAGAAGAAGAACATGAGAGAAAGCCAGAAATTCAGAAGTTGGTGAATTACCAATTGTACATGGACACATCGGATTCGGTTCCGAAGCTGCACACGGACTCGAGCAGCTCCGGGCATGTGGTTTCACCGGATGTCACGTGCGACAGAGAGGTGCAAAGTGAACCAAAATGGAATGAACTTGGGATACAGCTGGATGACGCGTTTGGTTTTGAGTTCAATTACTTGGATAATAGCCTTTCGTTTGAGTATGAGGATGACCCTTTTGGGACCAATGATCAGTTCCAAATCAACCAGCTTTCGCCGTTACAGGATATGTTCATGTACCAACAAAAGCCATTTTGA 876 0.4338 MQGELELPPGFRFHPTDEELVNHYLCRKCAGHSISVPVVKEVDLYKFDPWQLPEMGYQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKVKAKGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTGNTQEVHNYYQHEEEEHERKPEIQKLVNYQLYMDTSDSVPKLHTDSSSSGHVVSPDVTCDREVQSEPKWNELGIQLDDAFGFEFNYLDNSLSFEYEDDPFGTNDQFQINQLSPLQDMFMYQQKPF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02384 291 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Vivi3g02384 291 PANTHER NAC TRANSCRIPTION FACTOR 56 7 200 - -
Vivi3g02384 291 FunFam NAC transcription factor 16 161 - -
Vivi3g02384 291 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vivi3g02384 291 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vivi3g02384 291 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02384 Vivi-Chr3 40181756 40183428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02384 1 291 NAC Transcription Factor Family AT1G01720 61.842 7.46e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi3g02384 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02384 - - gmx:100779770 453.751