Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02353 ATGGATAAGTACGAGGCGGTTAAGGATTTGGGTTCTGGTAATTTTGGGGTTGCCAGGCTTATGAGAAACAAAGTTACAAAGGAACTTGTCGCCATGAAATACATCGAGCGCGGTTCCAAGATTGATGAGAACGTGGCTAGAGAGATCATGAATCACAGGTCTCTTCGGCATCCAAATATAATTCGATTCAAGGAGGTGATTTTGACTCCAACGCATTTAGCAATAGTTATGGAGTATGCAGCTGGAGGAGAGCTTTTTGAGAGGATATGTAATGCTGGAAGGTTCAGTGAAGATGAGGCCAGGTATTTCTTTCAGCAGCTGATCTCAGGTGTCCATTTCTGTCATACCATGCAAATATGTCACAGAGATCTGAAGCTAGAGAATACCCTTTTAGATGGAAGTCCTGCACCTCGCTTAAAAATTTGTGACTTCGGTTATTCCAAGTCATCTTTGCTCCATTCACGTCCCAAATCAACGGTTGGAACACCAGCTTATATAGCACCAGAGGTTCTTTCTAGGAGGGAGTATGATGGAAAGATGGCTGATGTATGGTCATGTGGGGTGACTCTTTATGTGATGCTGGTCGGAGCATATCCGTTTGAGGACCAGGATGACCCTAAAAATTTTAGGAAAACAATTCAGCGTATAATGGCCATTCAATACAGAATTCCTGATTATGTTCACATATCTCAAGATTGTAGACACCTTATCTCTCGGATATTTGTTGCAAATCCATTGAGGAGAATTAATATTAGGGATATCAAGAGCCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACAGAATCAGCTCAAGCTATGTACTACCAGAGGGAAAATCCAAGCTTCCACCTACAAAGTGTGGACGATGTGATGAAAATCGTGGGAGAGGCAAGAAACCCGCCTCCAATATCTAGGCCTATCAAAGGTTTTGGCTGGGAAGGTGAAGAGGATGAAGAAGCAGAAGATTTGGAAGCGGAATTGGAGGAAGAGGAGGTTGAAGAAGACGAGTACGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCATATCAGTTAA 1068 0.4279 MDKYEAVKDLGSGNFGVARLMRNKVTKELVAMKYIERGSKIDENVAREIMNHRSLRHPNIIRFKEVILTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTIQRIMAIQYRIPDYVHISQDCRHLISRIFVANPLRRINIRDIKSHPWFLKNLPRELTESAQAMYYQRENPSFHLQSVDDVMKIVGEARNPPPISRPIKGFGWEGEEDEEAEDLEAELEEEEVEEDEYDKRVKEVHASGEFHIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02353 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02353 355 MobiDBLite consensus disorder prediction 339 355 - -
Vivi3g02353 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02353 355 MobiDBLite consensus disorder prediction 306 355 - -
Vivi3g02353 355 PANTHER SERINE/THREONINE KINASE 3 300 - -
Vivi3g02353 355 MobiDBLite consensus disorder prediction 316 338 - -
Vivi3g02353 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi3g02353 355 CDD STKc_SnRK2 3 259 - -
Vivi3g02353 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g02353 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vivi3g02353 355 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vivi3g02353 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vivi3g02353 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vivi3g02353 355 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Vivi3g02353 355 SUPERFAMILY Protein kinase-like (PK-like) 1 295 IPR011009 -
Vivi3g02353 355 Coils Coil 315 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02353 Vivi-Chr3 39768439 39771825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02353 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.222 1.35e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi3g02353 Pkinase 2.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02353 K14498 - gmx:547811 637.106