Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02313 ATGGCTCCCAGAGACAACAGAGTGGCCACCGCACTTTCCGGCCCCAACCCGTCAACCCCAAAAGAGATCCGTTTCAGAGGCGTCCGGAAGCGTCCTTGGGGTCGTTACGCCGCCGAGATCCGTGACCCAGGCAAGAAGACACGTGTCTGGCTTGGAACATTCGACACCGCTGAAGAAGCAGCGCGTGCTTACGACGCTGCAGCACGCGAGTTTCGTGGTGCGAAAGCGAAGACCAATTTCCCTACACCGATGGAGATTGTGAATATGAATGTTAACAACACGACACGCAGCCCGAGTCAGAGTAGCACTCTCGAGTCACCGTCACCGCCGCCGCTTGATCTGTCTCTCACACCATTCTCCGGCGGTTCCGGTGTTACCGTGGCGTTCCCCGTTGCCCGTCCTGTTTTGTTTTTCGACGCTTTCGCTCGTGCTGAGACCAGCCTTAGTATTGGCCGTCGTGAGATTTGCGGGTTTGACCATCCTGTAACCGATTTTCGACGCGCCGCCGTGCAGAGTGATTCTGATTCTTCTTCTGTTGTTGATTACGAGCGTGTGCCACGTCAGAGACTCCTGGATCTTGACCTTAACGTTCCTCCTCCACCTGAAGTTGCTTGA 615 0.5577 MAPRDNRVATALSGPNPSTPKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPMEIVNMNVNNTTRSPSQSSTLESPSPPPLDLSLTPFSGGSGVTVAFPVARPVLFFDAFARAETSLSIGRREICGFDHPVTDFRRAAVQSDSDSSSVVDYERVPRQRLLDLDLNVPPPPEVA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02313 204 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Vivi3g02313 204 MobiDBLite consensus disorder prediction 92 110 - -
Vivi3g02313 204 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Vivi3g02313 204 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g02313 204 MobiDBLite consensus disorder prediction 92 114 - -
Vivi3g02313 204 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Vivi3g02313 204 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vivi3g02313 204 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vivi3g02313 204 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vivi3g02313 204 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vivi3g02313 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 181 - -
Vivi3g02313 204 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vivi3g02313 204 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02313 Vivi-Chr3 38522741 38523777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02313 21 139 AP2-EREBP Transcription Factor Family AT3G15210 64.394 1.43e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g02313 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02313 K09286 - gmx:100500601 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02313 3 38522741 38523777 Vivi5g03329 5 124335030 124335979 ECH
Vivi3g02313 3 38522741 38523777 Vivi3g02313 3 38522741 38523777 ECH