Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02307 ATGCGATCCTTAGCTTCTTCATCGGGTAGGGGTAATGGTGATTCGGGTTCGAAGGTTAGGAAGAAACATAAGAAGTTGGATGCAATATGTGAGGAAGAGTATAATCGAAACCATGGTGAGTTGAATGAGGGTGATAATTTGAATGAGGAGGGTTCAGGGGTTCGGAGAAGCTCGCGGGTTAGGCGTGTTCCGGTTGTATTTGACGCCTCACCTTCGCCTAAGAAGAAACGGCAGAGGTTAGGGAAAGATGTAATGGTGAAGAGTGTGGAAGGTGATAAGAATTTAGGGAGAGAAAATGGGGGTTCTGTTGGTTTGAGATGGAGTTTGAGGTCGAGGTCAAGGGGTAAGAATGTCAGTTTTGAAGTGGAGGAGAGAGAATTGCCACGTAGGAAAAGGAAGCTGTTTGATGAGGAGTTGGAGGTTATAGAGGTTGATAAGAATGAGGAATTGGAGGTTGTGGAGGGTGATAGGAAGGAGGAATTGGAGGTTGTAGAGGTTGATAATAATGAGGAATTGGAGGTTGTGGAGGGTGATAGGAAAGTGGAATTGGAGGTTGTGGAGGGTGATGGGAAGGAGGAATTGGAGGTTGATAAGAAAGTGGAGTTGAAAGGTTATACACGAAAAAGGTCTAGGTCGAAGAGAATGGGGAAATTTGAAGCGACAAAGTATGTAAAAGGGCTTGAGGAAAATGAGTGTCAAGCAGTGGAACTTGTAGTTGTATTGAACCAAGGGGAGGGGAGTGCTTCGGTTCCGGAGACTGAATTGGCTGATGAAAATCCAAAAGATTTGAGAGATGAGAATGCTGCTTCTGAGATGGGGAATGAGGAGAGAATTGAAACTGACAATTTGCAAGCAGAGGAATGTAGTGGCAATGTTGAACCGTCTCTAGTGGAACATGTAGAAACTGTTGATGTGGGTGATCAAGTAGAGAGTGAGAAGGAAGAAAAAGATGCAAGTGACGAGGTTGAAATTGCTGGAGTTTCAACTAAACAGGTAGATAATGAAGGTTCTGTTGATAAGGAGGTTCACATTGAAGAAAATATCTCGAAAGATGAGAATATTGGGAGGAAGGATGAGTTGAAACAAGCATCGAAAGACAAGTCTGGGTACCGATGTATCAAAGAGGGCAGACGGTGTGGTTTGTGTGGAAGAGGAAGCGATGGTAAGCCTCCAAAAAGGTTAACTCAGGATAAAGGTGAAAGTGAGAATGAAGCTTATAGCGGCTCATCAGCTTCAGAGCAGCCTACTTATGATACCTGGGATGGTTTTGATGACGAACCTGGTTGGCTTGGGCGTCTTTTGGGCCCTATTAATGATCGTTATGGTATAGCTGGAATATGGGTGCATCAGAATTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGGGCTGCACTTTGTCGAGGAAGAGCACTGAAGTGCACACGTTGTGGGAGGCGAGGGGCAACCATTGGTTGTCGTGTTGACCGTTGTCCTAAAACTTATCATTTGGCTTGTGCAAGAGCAAATGGTTGCATCTTTGATCATCGGAAGTTTCTTATAGCTTGCACAGATCATCTGCATCTTTTCCAACCTTGTGGTAATAAATATTTAGTCCGGATAAAGAAGTTGAGGGCTAGGAAAATGATGTGGGAGACGAGGAAGCGTTCAAATGATGCTTCAAGAAAGGATATTGATGCAGAAGAGAGATGGTTGGAAAATTGTGGGGAGGATGAAGAATTTTTGAAACGCGAGAACAAGAGGCTTCAACGTGATCTATTGAGAATAGCCCCAATGTATATTGGTGGTTCAGACTCTGCTGGCAGTGAAAACTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCGTTGTATGAAAGAAGTTGTTATTATTCCTCTGCTATATCCTGATTTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGCGTTCTTTTGCATGGGTATCCTGGAACAGGGAAAACTTTAGTGGTCCGGTCATTGATAGGTGCATGTGCTCGTGGAGATAGACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATATGTTGGTGATGCTGAGCGTCAACTAAGACTGTTATTTCAAGTTGCTGAAAAATGTCAACCTTCTATTATATTCTTTGATGAGATTGATGGACTGGCACCCTGCCGAACTCCACAGCAAGACCAGACGCATAGTTCTGTCGTATCAACATTGCTTGCCCTTATGGATGGTTTAAAATCTAGGGGCTCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGACGCTGTTGATCCAGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTACTTTCCGTTGCCATCAACTGAAGACAGAGCTTCCATTCTTTCTCTTCACACACAAAAGTGGCCAAAACCAATTAGTGGATCCTTGCTTGGCTGGATTGCAAAGAAAACTTCTGGCTTTGCAGGTGCTGATCTTCAGGCTCTTTGTACCCAAGCGGCTATGAATGCGCTGAAGAGAAATTTCCCTTTGCAAAAGGTTCTATCTGTAGCTGAAAAAAGAAATTCTTCTGGTTGTAAGAACACTCCTCTCCCATCATTTACCGTGGAGGAGAGGGATTGGGTAGAGGCTTTTTCTTCTTCGCCATTACCGTGTTCCCAAAGAGAAGCTGGAAATGCTGCAAATGATGTAGTATGCTCCCCTCTTCCTGTCCAACTTATTCCTTGTTTATTGCGTCCATTATGCACTATTCTTGTATCTCTTTATCTCGATGAACGTCTGTGGTTGCCACTTCCTATATCCAAAGCCATGACATTGATTAAGGATGTAATAATTTCTGCTCTAGACAAAAAGAAAATGCCCATTGATCATTGGTGGTTGCACCTTGATGATTTTCTTCAAGAAACTAATGTTGCTTATGAGATAAGTAAGTGCCTTAGTTTTTCCGGCATTTTATCTGCCAACCATGGTTTTTCCGGTTCTTGCGATATTGTGGATCACGCCGATGACAAACCCTCCATGAAAAACCATGTTAACCTGTGTAATGGTAGATTAGCAGACATGGGAGTGACCAACAAATCAGGTTTTAGAATATTGATTTATGGTAATCCCCGATCTGGCCAGAGACATCTTGCTTCATGCCTTCTTTACTGCTTTATTGGAAATATTGAAGTACAAAAGATTGATATGGCAACTATTTCACAAGAAGGACATGGAGATATTGTGCAAGGGATTGCACAAATATTAATGAAATGTGCTAGCATGAAATCTTGTGTAATATTCATGCCTAGAATTGATTTGTGGGCTGTGGAGGAGGATTTCAAAACTGCTGAAAAGACGGATTCCTGCTCAATAAATCAACTATCATCTGCAATAGACAAGTCCTGTTTCCCACCCAGCCAAATTGTTGAGAAGGAAAATGGGATCAATACTGGGAAACACCCAGCAGATATGATCGAATTTCAATCCAACAAAAAGGCTTCATATGCCTGGATGACATTTATTGAGCAGGTGGAGTCCATTGGTTTATCCACATCCTTGATGATTCTGGCTACTTCAGAAATTCCATATCCTGAACTTCCACACAAGATAAGAGGATTCTTCAAAAGCTATCAATCAAAGGACAGACAATCAGCTCCTACTGTGCAAACAGTTCCTCAGTTCTCTCTGCAGATTGACGAGAATTTCGATCAGGACTTGGCAATCAATCTATCTGCAATAGAGCTTTTAAGAAATGTAACTGAGCAGCGGATTCAATTGATTCATCAGAGATCTCATTCTCACATGGGAGTCCAGAAGCTTGACAGAGCCTTTGAATCAATTGAAGTTTGTAAAGATAATGTCACTCAGAGAAAAGAAAACGAACCAGGCCATGAGAAGAAGGGTGAAGGCCAATTTCCTGAATCCTTGGCCAAAGTTCCCCAACCCAACAACAGTAGGTCGCTAAAAGGAAAGTCGAATCTTTTAATGGCAATATCCACATTTGGCTATCAAATTCTTCTATACCCTCATTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTTCTGATGTGAGTGGGCCTTGGAAGGGCTGGCCTTTTAATTCGTGTGTAATCCGTCCTACCAATTCACAAGACAAGGTGGTAATTTCTAGTAGCTCTGGTGGCACTAAAAGCAAAGAAAGTGCCGGTTTAGTTAGAGGCTTGGTTGCTGTTGGTTTATCAGCATACAAAGGTGTTTATAAATCAGTTCGGGAAGTTTCCCTTGAGATAAGGAAAGTACTTGAGATCTTAACTGAGACAATTAACATGAAAATTCAAGCTGGGAGAAACAGACATCAATATCTGCGTATTTTATCCCAAGTGGCTTATTTGGAAGATATGGTCAACAACTGGGCTTATGGATTGTTAAGTCTAGATCAGGCTTCCCCAGAGCTTGCAGCAAAGGTCATACCTGCAGCTTCCGGGTCTTTAAACAGTCATCTTGCATGTGAAGACCGCCACATAGCCGAAGGTGAGGATTGCCATTTGGTTTCTCCTGCTGGTAGTGATGATTTGGAGACACTGGAGAAAAGTCCTAAGGGAGTTCCTACCGTAACAACCGAGCAGCATTCCTTGAACGAAATAAATGATAATTTAGGTGATACTGATTGTGAAGGCCAAAGAATACATTCTGAAGGATCTCCACATAACCATCGTTGTGCAGATACGAATATTATCAACTCTTGTCTTATAAACCAATCTCTTCATCCATCCCTGAATCAGGAGAATGGGGTGTTATCTGGAGTGTCTGAATCAGTAACTGCTGAAAATCACGAAGCTGCAGGTGGAGAACTTGGAATATCGAAAGACTTGAATAAATCCACATGCACTCGCCCTACAGTCATTTCTGAAAATGGATTTCACACCTGTGAGCAGGAGAATATTGAGATTGGCAGTTCTAAATCAAGTGATATTGAATCTGATAAACATGAGAATACTTTAGATATCAATGCCTGTTCAAGTAAGGACAGTGGTCCAGATGAATCTGGGGTTGTTTGCTTTTACCAATGTTGCCCTCATTGTCTCAGAAGCCTCTATCATTTGACGCGAAAAATACTTGTTCGCGAATGGGGATCGAATAGAAGCCATTGGACAATAGAAGATGTCCATGATGCTGTTTCTACATTATCCGTGGATCTTATTTCAGCAGTTAGAAAATGTTACATGGAAAAAGCTTTCACTGATTTATCCAATAAGAAAACATCTGTTGAATATTCGAACCTGACAACCTGTACTACTGAAAATCGAGGCAAAGATGTTGTGCCGGCTGAATGTGTTTCTCACTCAGCAAGTCAAAATGCTAGTATGAGTGAAGACGCATTAACCAATGAACCGGTAAAGCTTGATTTGAAATATGTTTTCAGAGATGGTGTGCTAGTTCCTATGGACCCTGCAAAGGATGCCTCTCTTCACTGTAAATTTGAGAAATTGTGTCTTTGTTCTCTAATAGAGTTGATAGTGAAAACTAAGGGCCCTTTAGATTAA 5535 0.4206 MRSLASSSGRGNGDSGSKVRKKHKKLDAICEEEYNRNHGELNEGDNLNEEGSGVRRSSRVRRVPVVFDASPSPKKKRQRLGKDVMVKSVEGDKNLGRENGGSVGLRWSLRSRSRGKNVSFEVEERELPRRKRKLFDEELEVIEVDKNEELEVVEGDRKEELEVVEVDNNEELEVVEGDRKVELEVVEGDGKEELEVDKKVELKGYTRKRSRSKRMGKFEATKYVKGLEENECQAVELVVVLNQGEGSASVPETELADENPKDLRDENAASEMGNEERIETDNLQAEECSGNVEPSLVEHVETVDVGDQVESEKEEKDASDEVEIAGVSTKQVDNEGSVDKEVHIEENISKDENIGRKDELKQASKDKSGYRCIKEGRRCGLCGRGSDGKPPKRLTQDKGESENEAYSGSSASEQPTYDTWDGFDDEPGWLGRLLGPINDRYGIAGIWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLACARANGCIFDHRKFLIACTDHLHLFQPCGNKYLVRIKKLRARKMMWETRKRSNDASRKDIDAEERWLENCGEDEEFLKRENKRLQRDLLRIAPMYIGGSDSAGSENSFQGWESVAGLKDVIRCMKEVVIIPLLYPDFFDNLGLTPPRGVLLHGYPGTGKTLVVRSLIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTPQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTQKWPKPISGSLLGWIAKKTSGFAGADLQALCTQAAMNALKRNFPLQKVLSVAEKRNSSGCKNTPLPSFTVEERDWVEAFSSSPLPCSQREAGNAANDVVCSPLPVQLIPCLLRPLCTILVSLYLDERLWLPLPISKAMTLIKDVIISALDKKKMPIDHWWLHLDDFLQETNVAYEISKCLSFSGILSANHGFSGSCDIVDHADDKPSMKNHVNLCNGRLADMGVTNKSGFRILIYGNPRSGQRHLASCLLYCFIGNIEVQKIDMATISQEGHGDIVQGIAQILMKCASMKSCVIFMPRIDLWAVEEDFKTAEKTDSCSINQLSSAIDKSCFPPSQIVEKENGINTGKHPADMIEFQSNKKASYAWMTFIEQVESIGLSTSLMILATSEIPYPELPHKIRGFFKSYQSKDRQSAPTVQTVPQFSLQIDENFDQDLAINLSAIELLRNVTEQRIQLIHQRSHSHMGVQKLDRAFESIEVCKDNVTQRKENEPGHEKKGEGQFPESLAKVPQPNNSRSLKGKSNLLMAISTFGYQILLYPHFAELCWVTSKLKEGPCSDVSGPWKGWPFNSCVIRPTNSQDKVVISSSSGGTKSKESAGLVRGLVAVGLSAYKGVYKSVREVSLEIRKVLEILTETINMKIQAGRNRHQYLRILSQVAYLEDMVNNWAYGLLSLDQASPELAAKVIPAASGSLNSHLACEDRHIAEGEDCHLVSPAGSDDLETLEKSPKGVPTVTTEQHSLNEINDNLGDTDCEGQRIHSEGSPHNHRCADTNIINSCLINQSLHPSLNQENGVLSGVSESVTAENHEAAGGELGISKDLNKSTCTRPTVISENGFHTCEQENIEIGSSKSSDIESDKHENTLDINACSSKDSGPDESGVVCFYQCCPHCLRSLYHLTRKILVREWGSNRSHWTIEDVHDAVSTLSVDLISAVRKCYMEKAFTDLSNKKTSVEYSNLTTCTTENRGKDVVPAECVSHSASQNASMSEDALTNEPVKLDLKYVFRDGVLVPMDPAKDASLHCKFEKLCLCSLIELIVKTKGPLD 1844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02307 1844 ProSiteProfiles Extended PHD (ePHD) domain profile. 416 528 IPR034732 -
Vivi3g02307 1844 FunFam ATPase family, AAA domain-containing 2 614 797 - -
Vivi3g02307 1844 Gene3D - 616 790 IPR027417 -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 1 81 - -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 255 282 - -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 384 418 - -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 304 323 - -
Vivi3g02307 1844 SMART AAA_5 651 792 IPR003593 GO:0016887
Vivi3g02307 1844 Pfam ATPase family associated with various cellular activities (AAA) 655 790 IPR003959 GO:0005524|GO:0016887
Vivi3g02307 1844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 847 IPR027417 -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 20 57 - -
Vivi3g02307 1844 Coils Coil 573 593 - -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 1286 1304 - -
Vivi3g02307 1844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 529 IPR013083 -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 401 417 - -
Vivi3g02307 1844 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 791 884 - -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 1286 1317 - -
Vivi3g02307 1844 Pfam AAA+ lid domain 816 848 IPR041569 -
Vivi3g02307 1844 ProSitePatterns AAA-protein family signature. 760 778 IPR003960 GO:0005524|GO:0016887
Vivi3g02307 1844 Gene3D - 791 852 - -
Vivi3g02307 1844 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 374 530 - -
Vivi3g02307 1844 Pfam PHD-like zinc-binding domain 449 527 - -
Vivi3g02307 1844 MobiDBLite consensus disorder prediction 245 282 - -
Vivi3g02307 1844 PANTHER AAA DOMAIN-CONTAINING 17 1751 IPR045199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02307 Vivi-Chr3 38444977 38453074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02307 617 852 Calmodulin-binding Proteins AT3G56690 40.756 2.65e-44 174