Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02297 ATGTCAACTCGTAGTTATGCTTTTGGAAGACCTGATGAGGCTACACATCCAGATTCTCTTAGAGCTACCTTAGCTGAATTTGCTTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTAGTTAAGATATACCAAGATTCAGCTTTCTCAGCTGGTGAATTGTTGACAGTTGCACTAGCTCATGCTTTTGCTCTATTTGCTGCTGTGTCTTCTAGCATGCATGTATCTGGTGGACATGTGAATCCTGTTGTCACATTTGGTGCTCTTTTAGGTGGCATAATCTTTGTCATTCGTGCTGTTTACTATTGGGTTGCTAAACTGTTAGGTGCTATTGTTGCTGCACTCTTGCTTAGGCTTGTCACTAATAACATGGTAAGCATTTATTTTCATCATCTCTGA 411 0.4112 MSTRSYAFGRPDEATHPDSLRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLTVALAHAFALFAAVSSSMHVSGGHVNPVVTFGALLGGIIFVIRAVYYWVAKLLGAIVAALLLRLVTNNMVSIYFHHL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02297 136 Pfam Major intrinsic protein 14 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g02297 136 Gene3D Glycerol uptake facilitator protein. 4 134 IPR023271 -
Vivi3g02297 136 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g02297 136 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g02297 136 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g02297 136 SUPERFAMILY Aquaporin-like 13 131 IPR023271 -
Vivi3g02297 136 PANTHER AQUAPORIN-8 6 131 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02297 Vivi-Chr3 38198674 38199216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02297 4 134 Major Intrinsic Protein MIP AT1G17810 67.647 4.90e-47 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02297 K09873 - gmx:100817450 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02297 3 38198674 38199216 Vivi3g02297 3 38198674 38199216 ECH