Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02290 ATGGGTAGATCTCCTTGCTGTGAGAAACAACACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATCAACGTCTCATTAACTACATCAAAACTAACGGTGAAGGTTGCTGGAGATCTCTTCCAAAAGCAGCTGGCTTGTTGAGATGTGGCAAGAGTTGTAGACTCAGATGGATTAATTACCTTAGACCTGATCTCAAGAGAGGAAACTTTACTGAACAAGAAGATGATCTTATCATCAATCTCCACAACTTACTTGGAAACAAATGGTCACTAATAGCGGCGAGATTACCCGGAAGAACAGATAATGAGATTAAGAATTACTGGAACACTCATATCAAGAGAAAACTCTACAACCGTGGAGTCGATCCTCAAACTCATCGGCCACTCAATGACTCCGCGGTGTCCACTACCGTCCCCACCGCGGTTCCACCACGAGGTCAGATCACAACAAGCCATAAGAATATTATCATCAAAGATGTTAGCATTGTTAGCAATAGCAAACTGGTTTGTGAGGATTCAAATTCAAATAGCAGTAGCGGAGTTAGCTCTGATCAGGAAGCTTATCAGCATCAACAACTCAACTTGGACCTTTCCATTGGTCTTCCGTCTTCACGTCCTCAAAATAACAAAGACAACTTGATGCTACAACAACCACAAGATGGTGATTATGAGCAACAAGAAACTAAGGTTACTCCTAGTCATGGTGTGTGTCTGTGTTACAGTCTAGGGTTTCTGAGAAACCAAGTGTGTTGCTGCAACAAAGATATAGGTAATAGTGTTACTACAGCGGTCACTGATAATAATATGTATAGATTTTACAGACCCATGAATATTTAG 837 0.411 MGRSPCCEKQHTNKGAWTKEEDQRLINYIKTNGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHNLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYNRGVDPQTHRPLNDSAVSTTVPTAVPPRGQITTSHKNIIIKDVSIVSNSKLVCEDSNSNSSSGVSSDQEAYQHQQLNLDLSIGLPSSRPQNNKDNLMLQQPQDGDYEQQETKVTPSHGVCLCYSLGFLRNQVCCCNKDIGNSVTTAVTDNNMYRFYRPMNI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02290 278 FunFam Myb transcription factor 11 67 - -
Vivi3g02290 278 CDD SANT 69 112 IPR001005 -
Vivi3g02290 278 CDD SANT 16 61 IPR001005 -
Vivi3g02290 278 SMART sant 13 63 IPR001005 -
Vivi3g02290 278 SMART sant 66 114 IPR001005 -
Vivi3g02290 278 MobiDBLite consensus disorder prediction 128 146 - -
Vivi3g02290 278 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 207 - -
Vivi3g02290 278 MobiDBLite consensus disorder prediction 199 227 - -
Vivi3g02290 278 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi3g02290 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi3g02290 278 Gene3D - 14 66 - -
Vivi3g02290 278 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi3g02290 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi3g02290 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi3g02290 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi3g02290 278 FunFam Myb transcription factor 68 137 - -
Vivi3g02290 278 MobiDBLite consensus disorder prediction 121 146 - -
Vivi3g02290 278 Gene3D - 68 134 - -
Vivi3g02290 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02290 Vivi-Chr3 37756426 37757886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02290 1 203 MYB Transcription Factor Family AT4G09460 60.280 5.57e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g02290 Myb_DNA-binding 9.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02290 K09422 - gmx:100808083 365.925