Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02256 ATGAATAATAGGAGAGAATCATGGGAAGAAGAGGGAAAAGAAGATGAGAATTTGTTTCCAGTGTATTCTGAAAGATCACAGCAAGATATGTCAGCCATAGTTTCTGCACTTACACAAGTCATGGGAGGGAACAACAACAATGAACTTCAAGAAGCTTCTTCAGTCCATAATATTAATGAACAATCTCAACAACCACAACAAGATCAAGGGAGTGAAAGAAAGAGACACTATAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAGATTCGCGATCCGAAGAAGGCGGCAAGAGTATGGCTTGGAACGTTTGAAACTGCTGAGGCTGCCGCTGTTGCCTATGACGAAGCTGCACTTAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATTTCATCATTTTATGTCATCCACAAATAACCAACAACAGTCTAACTCAGTTCCTCTTGCACACTTTTCTCATGAAGCATATTCAAATCCTTATCAATATGCTGCTGCACAAGCACAACTTCAAGGTGGTGGTGGTGGTGGCAGTAGCAACTTCAATCAAGATATGTTTGGTTATTATGGTAGAGACATGTTTGCTTCTAATCCTCAGCACTTATCAGCTGCATCTTTGTCTTCATCTTCATCCTCATCTTCTGAATTATCTCAGCAGCAACAAGAGTTTCTGAGATTGTCGATGCAGTTCGGAGGTTCTTCTTCTGGTTCTCAGCCTCCAAGGAATTGGAGGGATGACATGGATGGGACACACTAA 795 0.4201 MNNRRESWEEEGKEDENLFPVYSERSQQDMSAIVSALTQVMGGNNNNELQEASSVHNINEQSQQPQQDQGSERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAVAYDEAALRFKGSKAKLNFPERVQSSAEFGFHHFMSSTNNQQQSNSVPLAHFSHEAYSNPYQYAAAQAQLQGGGGGGSSNFNQDMFGYYGRDMFASNPQHLSAASLSSSSSSSSELSQQQQEFLRLSMQFGGSSSGSQPPRNWRDDMDGTH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02256 264 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vivi3g02256 264 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Vivi3g02256 264 MobiDBLite consensus disorder prediction 43 80 - -
Vivi3g02256 264 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g02256 264 PANTHER DNA-BINDING DOMAIN 44 226 IPR044808 GO:0003700|GO:0009873
Vivi3g02256 264 MobiDBLite consensus disorder prediction 43 68 - -
Vivi3g02256 264 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Vivi3g02256 264 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Vivi3g02256 264 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Vivi3g02256 264 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Vivi3g02256 264 MobiDBLite consensus disorder prediction 216 254 - -
Vivi3g02256 264 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g02256 264 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Vivi3g02256 264 MobiDBLite consensus disorder prediction 216 264 - -
Vivi3g02256 264 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Vivi3g02256 264 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02256 Vivi-Chr3 37181479 37182935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02256 17 137 AP2-EREBP Transcription Factor Family AT5G61890 67.176 3.29e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g02256 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02256 - - gmx:100787091 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02256 3 37181479 37182935 Vivi3g02256 3 37181479 37182935 ECH
Vivi3g02256 3 37181479 37182935 Vivi2g05270 2 176371251 176373192 PCT